Hb_003029_010

Information

Type transcription factor
Description TF Family: WRKY
Location Contig3029: 3510-5194
Sequence    

Annotation

kegg
ID rcu:RCOM_1346980
description hypothetical protein
nr
ID XP_002515275.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O04609
description WRKY transcription factor 22 OS=Arabidopsis thaliana GN=WRKY22 PE=2 SV=1
trembl
ID B9RND6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1346980 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 69

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31927: 3638-5284 , PASA_asmbl_31928: 4040-4534 , PASA_asmbl_31929: 3903-4534
cDNA
(Sanger)
(ID:Location)		 001_N06.ab1: 3735-4985

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003029_010 0.0 transcription factor TF Family: WRKY conserved hypothetical protein [Ricinus communis]
2 Hb_000152_410 0.0727126361 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
3 Hb_029584_110 0.0813381788 transcription factor TF Family: MYB-related PREDICTED: myb-like protein J [Jatropha curcas]
4 Hb_002596_090 0.0827528342 - - PREDICTED: calcium-transporting ATPase 4, plasma membrane-type-like isoform X1 [Jatropha curcas]
5 Hb_003387_080 0.1072463683 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
6 Hb_029095_010 0.1086109456 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_21060 [Jatropha curcas]
7 Hb_005016_080 0.1138135177 - - PREDICTED: neurofilament heavy polypeptide-like [Jatropha curcas]
8 Hb_002010_100 0.1156181956 - - PREDICTED: uncharacterized protein LOC105633355 [Jatropha curcas]
9 Hb_183025_010 0.1166358453 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Jatropha curcas]
10 Hb_005463_070 0.1168269426 - - calcium ion binding protein, putative [Ricinus communis]
11 Hb_000990_040 0.1190905948 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 7 [Jatropha curcas]
12 Hb_000656_260 0.1194272897 - - PREDICTED: uncharacterized protein LOC105631376 [Jatropha curcas]
13 Hb_000032_090 0.1211370413 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007483_080 0.1226769573 - - hypothetical protein RCOM_0634810 [Ricinus communis]
15 Hb_093364_010 0.124032335 - - PREDICTED: uncharacterized protein LOC105636199 [Jatropha curcas]
16 Hb_005486_020 0.1248425429 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT5 [Jatropha curcas]
17 Hb_000500_230 0.1260188807 - - hypothetical protein RCOM_0634810 [Ricinus communis]
18 Hb_000732_160 0.1284417031 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
19 Hb_007894_120 0.1285317334 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase-like isoform X1 [Jatropha curcas]
20 Hb_000260_480 0.1286969446 transcription factor TF Family: GRAS PREDICTED: protein SCARECROW [Jatropha curcas]

Gene co-expression network

sample Hb_003029_010 Hb_003029_010 Hb_000152_410 Hb_000152_410 Hb_003029_010--Hb_000152_410 Hb_029584_110 Hb_029584_110 Hb_003029_010--Hb_029584_110 Hb_002596_090 Hb_002596_090 Hb_003029_010--Hb_002596_090 Hb_003387_080 Hb_003387_080 Hb_003029_010--Hb_003387_080 Hb_029095_010 Hb_029095_010 Hb_003029_010--Hb_029095_010 Hb_005016_080 Hb_005016_080 Hb_003029_010--Hb_005016_080 Hb_000152_410--Hb_002596_090 Hb_000878_090 Hb_000878_090 Hb_000152_410--Hb_000878_090 Hb_001769_120 Hb_001769_120 Hb_000152_410--Hb_001769_120 Hb_000836_420 Hb_000836_420 Hb_000152_410--Hb_000836_420 Hb_028487_040 Hb_028487_040 Hb_000152_410--Hb_028487_040 Hb_000656_260 Hb_000656_260 Hb_029584_110--Hb_000656_260 Hb_008202_010 Hb_008202_010 Hb_029584_110--Hb_008202_010 Hb_029584_110--Hb_002596_090 Hb_183025_010 Hb_183025_010 Hb_029584_110--Hb_183025_010 Hb_026016_010 Hb_026016_010 Hb_029584_110--Hb_026016_010 Hb_002596_090--Hb_028487_040 Hb_005486_020 Hb_005486_020 Hb_002596_090--Hb_005486_020 Hb_002596_090--Hb_029095_010 Hb_000318_050 Hb_000318_050 Hb_003387_080--Hb_000318_050 Hb_003387_080--Hb_005016_080 Hb_002849_120 Hb_002849_120 Hb_003387_080--Hb_002849_120 Hb_005463_070 Hb_005463_070 Hb_003387_080--Hb_005463_070 Hb_001160_020 Hb_001160_020 Hb_003387_080--Hb_001160_020 Hb_006269_010 Hb_006269_010 Hb_003387_080--Hb_006269_010 Hb_093364_010 Hb_093364_010 Hb_029095_010--Hb_093364_010 Hb_029095_010--Hb_005486_020 Hb_000990_040 Hb_000990_040 Hb_029095_010--Hb_000990_040 Hb_031685_010 Hb_031685_010 Hb_029095_010--Hb_031685_010 Hb_004611_050 Hb_004611_050 Hb_029095_010--Hb_004611_050 Hb_002010_100 Hb_002010_100 Hb_005016_080--Hb_002010_100 Hb_002361_010 Hb_002361_010 Hb_005016_080--Hb_002361_010 Hb_005016_080--Hb_005463_070 Hb_005016_080--Hb_000318_050 Hb_005016_080--Hb_001160_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0871639 53.9245 61.7609 24.2529 0.424639 0.145934
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.075847 0 0 12.0936 32.1409

CAGE analysis