Hb_001160_020

Information

Type transcription factor
Description TF Family: NF-YA
Location Contig1160: 4083-11141
Sequence    

Annotation

kegg
ID rcu:RCOM_0654210
description Nuclear transcription factor Y subunit A-3, putative
nr
ID XP_002521352.1
description Nuclear transcription factor Y subunit A-3, putative [Ricinus communis]
swissprot
ID Q9LVJ7
description Nuclear transcription factor Y subunit A-6 OS=Arabidopsis thaliana GN=NFYA6 PE=2 SV=1
trembl
ID B9S5T3
description Nuclear transcription factor Y subunit A-3, putative OS=Ricinus communis GN=RCOM_0654210 PE=4 SV=1
Gene Ontology
ID GO:0016602
description nuclear transcription factor y subunit a-3-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04911: 4101-4332 , PASA_asmbl_04913: 4410-6005 , PASA_asmbl_04915: 5828-11122
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001160_020 0.0 transcription factor TF Family: NF-YA Nuclear transcription factor Y subunit A-3, putative [Ricinus communis]
2 Hb_007747_100 0.0759191688 - - PREDICTED: probable F-box protein At1g60180 [Jatropha curcas]
3 Hb_003849_030 0.0776277679 - - hypothetical protein AALP_AA5G029900 [Arabis alpina]
4 Hb_002849_120 0.0857932634 - - ferric reductase oxidase [Manihot esculenta]
5 Hb_001153_090 0.0881792844 - - PREDICTED: protein FAM63A [Jatropha curcas]
6 Hb_000318_050 0.0891969206 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40 isoform X1 [Jatropha curcas]
7 Hb_023344_130 0.0977735297 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
8 Hb_003387_080 0.0982327548 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
9 Hb_005016_080 0.1068921862 - - PREDICTED: neurofilament heavy polypeptide-like [Jatropha curcas]
10 Hb_006483_090 0.1137902221 - - PREDICTED: uncharacterized protein LOC105639979 [Jatropha curcas]
11 Hb_000046_430 0.1146306942 - - hypothetical protein JCGZ_02013 [Jatropha curcas]
12 Hb_007483_080 0.1165172653 - - hypothetical protein RCOM_0634810 [Ricinus communis]
13 Hb_006970_170 0.1176405055 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
14 Hb_006269_010 0.1184227233 - - hypothetical protein JCGZ_21552 [Jatropha curcas]
15 Hb_002010_100 0.1190691672 - - PREDICTED: uncharacterized protein LOC105633355 [Jatropha curcas]
16 Hb_002361_010 0.1198315524 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
17 Hb_000477_110 0.121503436 transcription factor TF Family: GRAS PREDICTED: DELLA protein SLR1-like [Jatropha curcas]
18 Hb_001956_080 0.1219370078 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 14 [Jatropha curcas]
19 Hb_000007_440 0.124369158 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
20 Hb_004525_020 0.1247149538 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 6-like [Jatropha curcas]

Gene co-expression network

sample Hb_001160_020 Hb_001160_020 Hb_007747_100 Hb_007747_100 Hb_001160_020--Hb_007747_100 Hb_003849_030 Hb_003849_030 Hb_001160_020--Hb_003849_030 Hb_002849_120 Hb_002849_120 Hb_001160_020--Hb_002849_120 Hb_001153_090 Hb_001153_090 Hb_001160_020--Hb_001153_090 Hb_000318_050 Hb_000318_050 Hb_001160_020--Hb_000318_050 Hb_023344_130 Hb_023344_130 Hb_001160_020--Hb_023344_130 Hb_007747_100--Hb_001153_090 Hb_005488_030 Hb_005488_030 Hb_007747_100--Hb_005488_030 Hb_006269_010 Hb_006269_010 Hb_007747_100--Hb_006269_010 Hb_007747_100--Hb_002849_120 Hb_001956_080 Hb_001956_080 Hb_007747_100--Hb_001956_080 Hb_003849_030--Hb_002849_120 Hb_000046_430 Hb_000046_430 Hb_003849_030--Hb_000046_430 Hb_006970_170 Hb_006970_170 Hb_003849_030--Hb_006970_170 Hb_007113_020 Hb_007113_020 Hb_003849_030--Hb_007113_020 Hb_003849_030--Hb_001153_090 Hb_033153_040 Hb_033153_040 Hb_002849_120--Hb_033153_040 Hb_002849_120--Hb_001153_090 Hb_000680_020 Hb_000680_020 Hb_002849_120--Hb_000680_020 Hb_127661_010 Hb_127661_010 Hb_002849_120--Hb_127661_010 Hb_001153_090--Hb_006269_010 Hb_001153_090--Hb_023344_130 Hb_003077_140 Hb_003077_140 Hb_001153_090--Hb_003077_140 Hb_005463_070 Hb_005463_070 Hb_000318_050--Hb_005463_070 Hb_003387_080 Hb_003387_080 Hb_000318_050--Hb_003387_080 Hb_000382_030 Hb_000382_030 Hb_000318_050--Hb_000382_030 Hb_005016_080 Hb_005016_080 Hb_000318_050--Hb_005016_080 Hb_002010_100 Hb_002010_100 Hb_000318_050--Hb_002010_100 Hb_006788_100 Hb_006788_100 Hb_023344_130--Hb_006788_100 Hb_002078_240 Hb_002078_240 Hb_023344_130--Hb_002078_240 Hb_023344_130--Hb_001956_080 Hb_000501_040 Hb_000501_040 Hb_023344_130--Hb_000501_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.112502 16.2829 15.6688 8.0606 0.0994809 0.168651
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.403706 10.219 13.7628

CAGE analysis