Hb_007747_100

Information

Type -
Description -
Location Contig7747: 82805-83863
Sequence    

Annotation

kegg
ID pop:POPTR_0006s22490g
description F-box family protein
nr
ID XP_012074432.1
description PREDICTED: probable F-box protein At1g60180 [Jatropha curcas]
swissprot
ID Q9SIH5
description Probable F-box protein At1g60180 OS=Arabidopsis thaliana GN=At2g36090 PE=2 SV=1
trembl
ID A0A067KV96
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08829 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57744: 83244-83552
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007747_100 0.0 - - PREDICTED: probable F-box protein At1g60180 [Jatropha curcas]
2 Hb_001160_020 0.0759191688 transcription factor TF Family: NF-YA Nuclear transcription factor Y subunit A-3, putative [Ricinus communis]
3 Hb_001153_090 0.0821638986 - - PREDICTED: protein FAM63A [Jatropha curcas]
4 Hb_005488_030 0.0957755433 - - F3F9.11 [Arabidopsis lyrata subsp. lyrata]
5 Hb_006269_010 0.1011089553 - - hypothetical protein JCGZ_21552 [Jatropha curcas]
6 Hb_002849_120 0.1019119795 - - ferric reductase oxidase [Manihot esculenta]
7 Hb_001956_080 0.1024503912 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 14 [Jatropha curcas]
8 Hb_006970_170 0.105474444 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
9 Hb_003849_030 0.1075715811 - - hypothetical protein AALP_AA5G029900 [Arabis alpina]
10 Hb_023344_130 0.1098860536 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
11 Hb_000318_050 0.1130383968 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40 isoform X1 [Jatropha curcas]
12 Hb_000260_480 0.1136303884 transcription factor TF Family: GRAS PREDICTED: protein SCARECROW [Jatropha curcas]
13 Hb_000477_110 0.1140397249 transcription factor TF Family: GRAS PREDICTED: DELLA protein SLR1-like [Jatropha curcas]
14 Hb_000025_590 0.1157956722 - - PREDICTED: cytochrome P450 94A1-like isoform X1 [Jatropha curcas]
15 Hb_001174_030 0.1202733944 - - unnamed protein product [Vitis vinifera]
16 Hb_002871_110 0.1255111008 transcription factor TF Family: ARF hypothetical protein POPTR_0014s12980g [Populus trichocarpa]
17 Hb_002809_120 0.1257996506 - - Uncharacterized protein TCM_031281 [Theobroma cacao]
18 Hb_006483_090 0.1273802676 - - PREDICTED: uncharacterized protein LOC105639979 [Jatropha curcas]
19 Hb_000472_020 0.1275386162 - - PREDICTED: uncharacterized protein LOC105641103 [Jatropha curcas]
20 Hb_003387_080 0.1290774831 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_007747_100 Hb_007747_100 Hb_001160_020 Hb_001160_020 Hb_007747_100--Hb_001160_020 Hb_001153_090 Hb_001153_090 Hb_007747_100--Hb_001153_090 Hb_005488_030 Hb_005488_030 Hb_007747_100--Hb_005488_030 Hb_006269_010 Hb_006269_010 Hb_007747_100--Hb_006269_010 Hb_002849_120 Hb_002849_120 Hb_007747_100--Hb_002849_120 Hb_001956_080 Hb_001956_080 Hb_007747_100--Hb_001956_080 Hb_003849_030 Hb_003849_030 Hb_001160_020--Hb_003849_030 Hb_001160_020--Hb_002849_120 Hb_001160_020--Hb_001153_090 Hb_000318_050 Hb_000318_050 Hb_001160_020--Hb_000318_050 Hb_023344_130 Hb_023344_130 Hb_001160_020--Hb_023344_130 Hb_001153_090--Hb_006269_010 Hb_001153_090--Hb_002849_120 Hb_001153_090--Hb_023344_130 Hb_003077_140 Hb_003077_140 Hb_001153_090--Hb_003077_140 Hb_001706_020 Hb_001706_020 Hb_005488_030--Hb_001706_020 Hb_005488_030--Hb_001956_080 Hb_000215_290 Hb_000215_290 Hb_005488_030--Hb_000215_290 Hb_005488_030--Hb_001153_090 Hb_005488_030--Hb_023344_130 Hb_001174_030 Hb_001174_030 Hb_006269_010--Hb_001174_030 Hb_000477_110 Hb_000477_110 Hb_006269_010--Hb_000477_110 Hb_000085_220 Hb_000085_220 Hb_006269_010--Hb_000085_220 Hb_014361_020 Hb_014361_020 Hb_006269_010--Hb_014361_020 Hb_004166_020 Hb_004166_020 Hb_006269_010--Hb_004166_020 Hb_033153_040 Hb_033153_040 Hb_002849_120--Hb_033153_040 Hb_002849_120--Hb_003849_030 Hb_000680_020 Hb_000680_020 Hb_002849_120--Hb_000680_020 Hb_127661_010 Hb_127661_010 Hb_002849_120--Hb_127661_010 Hb_001956_080--Hb_000477_110 Hb_001956_080--Hb_001153_090 Hb_004421_010 Hb_004421_010 Hb_001956_080--Hb_004421_010 Hb_001956_080--Hb_023344_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.14761 4.41548 3.4701 0.0580048 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.205776 3.07185 4.72815

CAGE analysis