Hb_014361_020

Information

Type -
Description -
Location Contig14361: 8999-13716
Sequence    

Annotation

kegg
ID vvi:100254308
description probable protein phosphatase 2C 63
nr
ID XP_012079358.1
description PREDICTED: probable protein phosphatase 2C 78 [Jatropha curcas]
swissprot
ID O81760
description Probable protein phosphatase 2C 63 OS=Arabidopsis thaliana GN=At4g33920 PE=2 SV=1
trembl
ID A0A067KJM9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12500 PE=3 SV=1
Gene Ontology
ID GO:0004722
description probable protein phosphatase 2c 63

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11445: 9012-9982
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014361_020 0.0 - - PREDICTED: probable protein phosphatase 2C 78 [Jatropha curcas]
2 Hb_004166_020 0.0558506829 - - -
3 Hb_000085_220 0.0686402165 - - conserved hypothetical protein [Ricinus communis]
4 Hb_167272_010 0.0913349612 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
5 Hb_006269_010 0.092469097 - - hypothetical protein JCGZ_21552 [Jatropha curcas]
6 Hb_174101_010 0.094853851 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
7 Hb_000497_100 0.0950429328 - - respiratory burst oxidase D [Manihot esculenta]
8 Hb_007894_030 0.097758001 - - calcium-dependent protein kinase, putative [Ricinus communis]
9 Hb_020285_010 0.1017775272 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3, partial [Pyrus x bretschneideri]
10 Hb_114310_050 0.1020560219 - - Iron(III)-zinc(II) purple acid phosphatase precursor family protein [Populus trichocarpa]
11 Hb_004306_140 0.1027085123 - - calcineurin-like phosphoesterase [Manihot esculenta]
12 Hb_000477_110 0.1033458785 transcription factor TF Family: GRAS PREDICTED: DELLA protein SLR1-like [Jatropha curcas]
13 Hb_000382_030 0.1062079992 transcription factor TF Family: bHLH hypothetical protein POPTR_0018s11800g [Populus trichocarpa]
14 Hb_000092_030 0.1077259282 - - PREDICTED: uncharacterized protein LOC105111213 [Populus euphratica]
15 Hb_001248_170 0.1114275073 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
16 Hb_001123_170 0.1122245745 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001369_070 0.1127323486 - - unnamed protein product [Vitis vinifera]
18 Hb_001515_030 0.1133672679 - - UDP-glucosyltransferase, putative [Ricinus communis]
19 Hb_004544_090 0.1133678504 - - cytochrome P450, putative [Ricinus communis]
20 Hb_000237_070 0.1133802765 - - Purple acid phosphatase precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_014361_020 Hb_014361_020 Hb_004166_020 Hb_004166_020 Hb_014361_020--Hb_004166_020 Hb_000085_220 Hb_000085_220 Hb_014361_020--Hb_000085_220 Hb_167272_010 Hb_167272_010 Hb_014361_020--Hb_167272_010 Hb_006269_010 Hb_006269_010 Hb_014361_020--Hb_006269_010 Hb_174101_010 Hb_174101_010 Hb_014361_020--Hb_174101_010 Hb_000497_100 Hb_000497_100 Hb_014361_020--Hb_000497_100 Hb_004166_020--Hb_000085_220 Hb_004166_020--Hb_174101_010 Hb_000092_030 Hb_000092_030 Hb_004166_020--Hb_000092_030 Hb_004166_020--Hb_006269_010 Hb_004166_020--Hb_000497_100 Hb_000085_220--Hb_000092_030 Hb_000085_220--Hb_167272_010 Hb_031862_020 Hb_031862_020 Hb_000085_220--Hb_031862_020 Hb_000085_220--Hb_006269_010 Hb_001515_030 Hb_001515_030 Hb_167272_010--Hb_001515_030 Hb_007420_010 Hb_007420_010 Hb_167272_010--Hb_007420_010 Hb_167272_010--Hb_031862_020 Hb_000237_070 Hb_000237_070 Hb_167272_010--Hb_000237_070 Hb_009803_030 Hb_009803_030 Hb_167272_010--Hb_009803_030 Hb_001153_090 Hb_001153_090 Hb_006269_010--Hb_001153_090 Hb_001174_030 Hb_001174_030 Hb_006269_010--Hb_001174_030 Hb_000477_110 Hb_000477_110 Hb_006269_010--Hb_000477_110 Hb_001544_070 Hb_001544_070 Hb_174101_010--Hb_001544_070 Hb_174101_010--Hb_001174_030 Hb_008092_020 Hb_008092_020 Hb_174101_010--Hb_008092_020 Hb_000472_020 Hb_000472_020 Hb_174101_010--Hb_000472_020 Hb_005034_010 Hb_005034_010 Hb_174101_010--Hb_005034_010 Hb_020285_010 Hb_020285_010 Hb_000497_100--Hb_020285_010 Hb_001369_070 Hb_001369_070 Hb_000497_100--Hb_001369_070 Hb_000028_460 Hb_000028_460 Hb_000497_100--Hb_000028_460 Hb_007894_030 Hb_007894_030 Hb_000497_100--Hb_007894_030 Hb_038777_010 Hb_038777_010 Hb_000497_100--Hb_038777_010 Hb_131662_010 Hb_131662_010 Hb_000497_100--Hb_131662_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.042316 3.49418 1.7158 2.19762 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.9285 1.37396

CAGE analysis