Hb_020285_010

Information

Type -
Description -
Location Contig20285: 687-3378
Sequence    

Annotation

kegg
ID pxb:103934695
description putative serine/threonine-protein kinase-like protein CCR3
nr
ID XP_009342720.1
description PREDICTED: putative serine/threonine-protein kinase-like protein CCR3, partial [Pyrus x bretschneideri]
swissprot
ID Q9LY50
description Putative serine/threonine-protein kinase-like protein CCR3 OS=Arabidopsis thaliana GN=CCR3 PE=2 SV=1
trembl
ID A0A061FT55
description CRINKLY4 related 3, putative OS=Theobroma cacao GN=TCM_042495 PE=3 SV=1
Gene Ontology
ID GO:0005622
description serine threonine-protein kinase-like protein ccr3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020285_010 0.0 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3, partial [Pyrus x bretschneideri]
2 Hb_000497_100 0.0578381435 - - respiratory burst oxidase D [Manihot esculenta]
3 Hb_046101_010 0.0677533649 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3 [Jatropha curcas]
4 Hb_001369_070 0.0739239452 - - unnamed protein product [Vitis vinifera]
5 Hb_007894_030 0.077865816 - - calcium-dependent protein kinase, putative [Ricinus communis]
6 Hb_038777_010 0.080930023 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN2 isoform X1 [Populus euphratica]
7 Hb_002276_100 0.0828376143 - - PREDICTED: UDP-glycosyltransferase 89A2-like [Jatropha curcas]
8 Hb_001636_010 0.0848484801 - - hypothetical protein JCGZ_01264 [Jatropha curcas]
9 Hb_074312_020 0.0889646453 - - cytochrome P450, putative [Ricinus communis]
10 Hb_000085_220 0.0968344054 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004544_090 0.099351406 - - cytochrome P450, putative [Ricinus communis]
12 Hb_014361_020 0.1017775272 - - PREDICTED: probable protein phosphatase 2C 78 [Jatropha curcas]
13 Hb_010417_100 0.1036679755 - - PREDICTED: respiratory burst oxidase homolog protein A [Jatropha curcas]
14 Hb_001894_040 0.1058609715 - - PREDICTED: carbonic anhydrase 2 isoform X1 [Jatropha curcas]
15 Hb_003376_200 0.1094092752 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
16 Hb_131662_010 0.1097337416 - - Insulin-degrading enzyme, putative [Ricinus communis]
17 Hb_005357_020 0.1116164109 - - conserved hypothetical protein [Ricinus communis]
18 Hb_065230_010 0.1168008402 - - PREDICTED: uncharacterized protein LOC100814166 isoform X1 [Glycine max]
19 Hb_001862_060 0.1177915473 - - PREDICTED: uncharacterized protein LOC105639802 isoform X1 [Jatropha curcas]
20 Hb_000028_460 0.1183673546 - - hypothetical protein POPTR_0015s05340g [Populus trichocarpa]

Gene co-expression network

sample Hb_020285_010 Hb_020285_010 Hb_000497_100 Hb_000497_100 Hb_020285_010--Hb_000497_100 Hb_046101_010 Hb_046101_010 Hb_020285_010--Hb_046101_010 Hb_001369_070 Hb_001369_070 Hb_020285_010--Hb_001369_070 Hb_007894_030 Hb_007894_030 Hb_020285_010--Hb_007894_030 Hb_038777_010 Hb_038777_010 Hb_020285_010--Hb_038777_010 Hb_002276_100 Hb_002276_100 Hb_020285_010--Hb_002276_100 Hb_000497_100--Hb_001369_070 Hb_000028_460 Hb_000028_460 Hb_000497_100--Hb_000028_460 Hb_000497_100--Hb_007894_030 Hb_000497_100--Hb_038777_010 Hb_131662_010 Hb_131662_010 Hb_000497_100--Hb_131662_010 Hb_046101_010--Hb_001369_070 Hb_074312_020 Hb_074312_020 Hb_046101_010--Hb_074312_020 Hb_046101_010--Hb_002276_100 Hb_001894_040 Hb_001894_040 Hb_046101_010--Hb_001894_040 Hb_000280_110 Hb_000280_110 Hb_046101_010--Hb_000280_110 Hb_001369_070--Hb_007894_030 Hb_001369_070--Hb_074312_020 Hb_001369_070--Hb_038777_010 Hb_010417_100 Hb_010417_100 Hb_007894_030--Hb_010417_100 Hb_007894_030--Hb_038777_010 Hb_001636_010 Hb_001636_010 Hb_007894_030--Hb_001636_010 Hb_005357_020 Hb_005357_020 Hb_038777_010--Hb_005357_020 Hb_001862_060 Hb_001862_060 Hb_038777_010--Hb_001862_060 Hb_038777_010--Hb_000028_460 Hb_002276_100--Hb_074312_020 Hb_002276_100--Hb_000280_110 Hb_002276_100--Hb_038777_010 Hb_002276_100--Hb_001369_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0713539 10.2329 3.84931 5.50717 0 0.0789196
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 8.05565 3.08393

CAGE analysis