Hb_000497_100

Information

Type -
Description -
Location Contig497: 99155-103386
Sequence    

Annotation

kegg
ID pop:POPTR_0003s15810g
description POPTRDRAFT_712105; hypothetical protein
nr
ID ADR70882.1
description respiratory burst oxidase D [Manihot esculenta]
swissprot
ID Q9FIJ0
description Respiratory burst oxidase homolog protein D OS=Arabidopsis thaliana GN=RBOHD PE=1 SV=1
trembl
ID V9HYS7
description Respiratory burst oxidase D OS=Manihot esculenta GN=RbohD PE=2 SV=1
Gene Ontology
ID GO:0005794
description respiratory burst oxidase homolog protein d-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45515: 99660-100632 , PASA_asmbl_45516: 101333-102464 , PASA_asmbl_45517: 102755-103392
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000497_100 0.0 - - respiratory burst oxidase D [Manihot esculenta]
2 Hb_020285_010 0.0578381435 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3, partial [Pyrus x bretschneideri]
3 Hb_001369_070 0.0734191293 - - unnamed protein product [Vitis vinifera]
4 Hb_000028_460 0.0785509502 - - hypothetical protein POPTR_0015s05340g [Populus trichocarpa]
5 Hb_007894_030 0.0828079212 - - calcium-dependent protein kinase, putative [Ricinus communis]
6 Hb_038777_010 0.0857110088 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN2 isoform X1 [Populus euphratica]
7 Hb_131662_010 0.0935520417 - - Insulin-degrading enzyme, putative [Ricinus communis]
8 Hb_005357_020 0.0945165071 - - conserved hypothetical protein [Ricinus communis]
9 Hb_014361_020 0.0950429328 - - PREDICTED: probable protein phosphatase 2C 78 [Jatropha curcas]
10 Hb_000085_220 0.0950717362 - - conserved hypothetical protein [Ricinus communis]
11 Hb_046101_010 0.0950814998 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3 [Jatropha curcas]
12 Hb_002276_100 0.0959838548 - - PREDICTED: UDP-glycosyltransferase 89A2-like [Jatropha curcas]
13 Hb_074312_020 0.0967675149 - - cytochrome P450, putative [Ricinus communis]
14 Hb_004166_020 0.098961028 - - -
15 Hb_010417_100 0.1023702445 - - PREDICTED: respiratory burst oxidase homolog protein A [Jatropha curcas]
16 Hb_000847_050 0.1087183467 - - PREDICTED: dCTP pyrophosphatase 1-like [Jatropha curcas]
17 Hb_005784_020 0.1088517878 - - Protein MKS1, putative [Ricinus communis]
18 Hb_004544_090 0.112192072 - - cytochrome P450, putative [Ricinus communis]
19 Hb_003376_300 0.1122851527 - - Aquaporin PIP2.2, putative [Ricinus communis]
20 Hb_029260_010 0.11438518 - - nitrate transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_000497_100 Hb_000497_100 Hb_020285_010 Hb_020285_010 Hb_000497_100--Hb_020285_010 Hb_001369_070 Hb_001369_070 Hb_000497_100--Hb_001369_070 Hb_000028_460 Hb_000028_460 Hb_000497_100--Hb_000028_460 Hb_007894_030 Hb_007894_030 Hb_000497_100--Hb_007894_030 Hb_038777_010 Hb_038777_010 Hb_000497_100--Hb_038777_010 Hb_131662_010 Hb_131662_010 Hb_000497_100--Hb_131662_010 Hb_046101_010 Hb_046101_010 Hb_020285_010--Hb_046101_010 Hb_020285_010--Hb_001369_070 Hb_020285_010--Hb_007894_030 Hb_020285_010--Hb_038777_010 Hb_002276_100 Hb_002276_100 Hb_020285_010--Hb_002276_100 Hb_001369_070--Hb_007894_030 Hb_001369_070--Hb_046101_010 Hb_074312_020 Hb_074312_020 Hb_001369_070--Hb_074312_020 Hb_001369_070--Hb_038777_010 Hb_008092_020 Hb_008092_020 Hb_000028_460--Hb_008092_020 Hb_000028_460--Hb_038777_010 Hb_005357_020 Hb_005357_020 Hb_000028_460--Hb_005357_020 Hb_002000_130 Hb_002000_130 Hb_000028_460--Hb_002000_130 Hb_012743_020 Hb_012743_020 Hb_000028_460--Hb_012743_020 Hb_010417_100 Hb_010417_100 Hb_007894_030--Hb_010417_100 Hb_007894_030--Hb_038777_010 Hb_001636_010 Hb_001636_010 Hb_007894_030--Hb_001636_010 Hb_038777_010--Hb_005357_020 Hb_001862_060 Hb_001862_060 Hb_038777_010--Hb_001862_060 Hb_065230_010 Hb_065230_010 Hb_131662_010--Hb_065230_010 Hb_000771_030 Hb_000771_030 Hb_131662_010--Hb_000771_030 Hb_005087_030 Hb_005087_030 Hb_131662_010--Hb_005087_030 Hb_010573_040 Hb_010573_040 Hb_131662_010--Hb_010573_040 Hb_000907_120 Hb_000907_120 Hb_131662_010--Hb_000907_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00771086 6.6659 2.38095 4.66528 0 0.0115374
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 5.12959 2.20786

CAGE analysis