Hb_010573_040

Information

Type -
Description -
Location Contig10573: 43675-44302
Sequence    

Annotation

kegg
ID pop:POPTR_0006s04920g
description POPTRDRAFT_819057; hypothetical protein
nr
ID XP_011048053.1
description PREDICTED: zinc-metallopeptidase, peroxisomal isoform X2 [Populus euphratica]
swissprot
ID O22941
description Zinc-metallopeptidase, peroxisomal OS=Arabidopsis thaliana GN=PXM16 PE=2 SV=1
trembl
ID B9H9U3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s04920g PE=3 SV=2
Gene Ontology
ID GO:0046872
description zinc- peroxisomal-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010573_040 0.0 - - PREDICTED: zinc-metallopeptidase, peroxisomal isoform X2 [Populus euphratica]
2 Hb_000110_030 0.1022614426 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
3 Hb_131662_010 0.1055929581 - - Insulin-degrading enzyme, putative [Ricinus communis]
4 Hb_008959_050 0.107005755 transcription factor TF Family: Orphans PREDICTED: late secretory pathway protein AVL9-like isoform X2 [Jatropha curcas]
5 Hb_177215_020 0.1142173648 - - acc synthase, putative [Ricinus communis]
6 Hb_036356_010 0.1161846973 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
7 Hb_000771_030 0.1230889978 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
8 Hb_004785_160 0.1277005097 - - PREDICTED: U-box domain-containing protein 28-like [Jatropha curcas]
9 Hb_005087_030 0.1286674416 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
10 Hb_004631_100 0.1311518469 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH96 [Jatropha curcas]
11 Hb_000137_030 0.1326084051 - - PREDICTED: cysteine-rich repeat secretory protein 55-like [Citrus sinensis]
12 Hb_189034_010 0.1348262493 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_002894_040 0.135240539 - - conserved hypothetical protein [Ricinus communis]
14 Hb_041145_010 0.1355146906 - - hypothetical protein CISIN_1g021653mg [Citrus sinensis]
15 Hb_028841_010 0.1355922312 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase CES101 [Jatropha curcas]
16 Hb_002325_050 0.1400116242 transcription factor TF Family: MYB MYB transcriptional factor [Populus nigra]
17 Hb_010614_020 0.1406331967 - - BnaC05g27570D [Brassica napus]
18 Hb_000914_110 0.1408822504 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein WIP2 [Jatropha curcas]
19 Hb_002370_060 0.1469859528 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Populus euphratica]
20 Hb_168068_010 0.1478736795 - - Disease resistance protein RFL1, putative [Ricinus communis]

Gene co-expression network

sample Hb_010573_040 Hb_010573_040 Hb_000110_030 Hb_000110_030 Hb_010573_040--Hb_000110_030 Hb_131662_010 Hb_131662_010 Hb_010573_040--Hb_131662_010 Hb_008959_050 Hb_008959_050 Hb_010573_040--Hb_008959_050 Hb_177215_020 Hb_177215_020 Hb_010573_040--Hb_177215_020 Hb_036356_010 Hb_036356_010 Hb_010573_040--Hb_036356_010 Hb_000771_030 Hb_000771_030 Hb_010573_040--Hb_000771_030 Hb_004785_160 Hb_004785_160 Hb_000110_030--Hb_004785_160 Hb_000598_020 Hb_000598_020 Hb_000110_030--Hb_000598_020 Hb_000031_160 Hb_000031_160 Hb_000110_030--Hb_000031_160 Hb_001141_210 Hb_001141_210 Hb_000110_030--Hb_001141_210 Hb_000110_030--Hb_177215_020 Hb_065230_010 Hb_065230_010 Hb_131662_010--Hb_065230_010 Hb_131662_010--Hb_000771_030 Hb_000497_100 Hb_000497_100 Hb_131662_010--Hb_000497_100 Hb_005087_030 Hb_005087_030 Hb_131662_010--Hb_005087_030 Hb_000907_120 Hb_000907_120 Hb_131662_010--Hb_000907_120 Hb_002894_040 Hb_002894_040 Hb_008959_050--Hb_002894_040 Hb_005144_100 Hb_005144_100 Hb_008959_050--Hb_005144_100 Hb_002044_110 Hb_002044_110 Hb_008959_050--Hb_002044_110 Hb_010614_020 Hb_010614_020 Hb_008959_050--Hb_010614_020 Hb_004218_220 Hb_004218_220 Hb_008959_050--Hb_004218_220 Hb_001198_160 Hb_001198_160 Hb_177215_020--Hb_001198_160 Hb_002370_060 Hb_002370_060 Hb_177215_020--Hb_002370_060 Hb_000836_220 Hb_000836_220 Hb_177215_020--Hb_000836_220 Hb_000054_140 Hb_000054_140 Hb_177215_020--Hb_000054_140 Hb_138086_010 Hb_138086_010 Hb_177215_020--Hb_138086_010 Hb_028841_010 Hb_028841_010 Hb_177215_020--Hb_028841_010 Hb_036356_010--Hb_010614_020 Hb_007403_010 Hb_007403_010 Hb_036356_010--Hb_007403_010 Hb_036356_010--Hb_002044_110 Hb_004635_040 Hb_004635_040 Hb_036356_010--Hb_004635_040 Hb_036356_010--Hb_008959_050 Hb_000771_030--Hb_065230_010 Hb_000417_120 Hb_000417_120 Hb_000771_030--Hb_000417_120 Hb_000098_250 Hb_000098_250 Hb_000771_030--Hb_000098_250 Hb_000771_030--Hb_000598_020 Hb_002410_010 Hb_002410_010 Hb_000771_030--Hb_002410_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.20132 2.1755 3.42756 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.01978 0.282946

CAGE analysis