Hb_004635_040

Information

Type -
Description -
Location Contig4635: 35424-38323
Sequence    

Annotation

kegg
ID mdm:103417687
description uncharacterized LOC103417687
nr
ID AAT40504.2
description Polyprotein, putative [Solanum demissum]
swissprot
ID -
description -
trembl
ID Q6L4B3
description Polyprotein, putative OS=Solanum demissum GN=SDM1_19t00015 PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43884: 37905-40457
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004635_040 0.0 - - Polyprotein, putative [Solanum demissum]
2 Hb_010614_020 0.0512750768 - - BnaC05g27570D [Brassica napus]
3 Hb_002217_210 0.0901174416 - - -
4 Hb_007403_010 0.093343064 - - hypothetical protein JCGZ_11090 [Jatropha curcas]
5 Hb_002044_110 0.1071745289 - - PREDICTED: probable carboxylesterase 5 isoform X1 [Populus euphratica]
6 Hb_005144_100 0.1141248256 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
7 Hb_036356_010 0.1226104499 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
8 Hb_006020_010 0.1251796184 - - PREDICTED: probable disease resistance protein At4g27220 [Jatropha curcas]
9 Hb_002894_040 0.1269612602 - - conserved hypothetical protein [Ricinus communis]
10 Hb_008959_050 0.1299186184 transcription factor TF Family: Orphans PREDICTED: late secretory pathway protein AVL9-like isoform X2 [Jatropha curcas]
11 Hb_006395_010 0.1318905722 - - hypothetical protein RCOM_0725500 [Ricinus communis]
12 Hb_002236_070 0.1346688974 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH36-like [Jatropha curcas]
13 Hb_000365_290 0.1374574043 - - PREDICTED: protein MTL1-like isoform X1 [Jatropha curcas]
14 Hb_012395_150 0.140657378 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
15 Hb_183820_010 0.1491121169 - - Disease resistance protein RFL1, putative [Ricinus communis]
16 Hb_001922_020 0.1552583776 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004218_220 0.1564614636 - - o-methyltransferase, putative [Ricinus communis]
18 Hb_179118_010 0.1584049896 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
19 Hb_000566_170 0.1607238311 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL9 homolog isoform X4 [Jatropha curcas]
20 Hb_017661_020 0.1609052066 - - hypothetical protein JCGZ_11176 [Jatropha curcas]

Gene co-expression network

sample Hb_004635_040 Hb_004635_040 Hb_010614_020 Hb_010614_020 Hb_004635_040--Hb_010614_020 Hb_002217_210 Hb_002217_210 Hb_004635_040--Hb_002217_210 Hb_007403_010 Hb_007403_010 Hb_004635_040--Hb_007403_010 Hb_002044_110 Hb_002044_110 Hb_004635_040--Hb_002044_110 Hb_005144_100 Hb_005144_100 Hb_004635_040--Hb_005144_100 Hb_036356_010 Hb_036356_010 Hb_004635_040--Hb_036356_010 Hb_010614_020--Hb_007403_010 Hb_010614_020--Hb_036356_010 Hb_010614_020--Hb_002044_110 Hb_002894_040 Hb_002894_040 Hb_010614_020--Hb_002894_040 Hb_010614_020--Hb_002217_210 Hb_002217_210--Hb_005144_100 Hb_002217_210--Hb_002044_110 Hb_001922_020 Hb_001922_020 Hb_002217_210--Hb_001922_020 Hb_008959_050 Hb_008959_050 Hb_002217_210--Hb_008959_050 Hb_007403_010--Hb_002894_040 Hb_007403_010--Hb_036356_010 Hb_007403_010--Hb_002044_110 Hb_017661_020 Hb_017661_020 Hb_007403_010--Hb_017661_020 Hb_004218_220 Hb_004218_220 Hb_002044_110--Hb_004218_220 Hb_002044_110--Hb_036356_010 Hb_002044_110--Hb_008959_050 Hb_001998_260 Hb_001998_260 Hb_005144_100--Hb_001998_260 Hb_003266_060 Hb_003266_060 Hb_005144_100--Hb_003266_060 Hb_005144_100--Hb_008959_050 Hb_001799_090 Hb_001799_090 Hb_005144_100--Hb_001799_090 Hb_010573_040 Hb_010573_040 Hb_036356_010--Hb_010573_040 Hb_036356_010--Hb_008959_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.058701 0.018597 0.0596853 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0510648 0

CAGE analysis