Hb_001922_020

Information

Type -
Description -
Location Contig1922: 13652-14188
Sequence    

Annotation

kegg
ID rcu:RCOM_1581550
description hypothetical protein
nr
ID XP_002513626.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RIQ7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1581550 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001922_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002217_210 0.1063817619 - - -
3 Hb_003768_110 0.1308201299 - - hypothetical protein POPTR_0004s12230g [Populus trichocarpa]
4 Hb_004452_080 0.139921779 - - ring finger protein, putative [Ricinus communis]
5 Hb_002044_110 0.1442017829 - - PREDICTED: probable carboxylesterase 5 isoform X1 [Populus euphratica]
6 Hb_003413_020 0.1450899931 - - -
7 Hb_002236_070 0.1459530073 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH36-like [Jatropha curcas]
8 Hb_004129_110 0.1484317117 - - Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]
9 Hb_004635_040 0.1552583776 - - Polyprotein, putative [Solanum demissum]
10 Hb_010614_020 0.1566630861 - - BnaC05g27570D [Brassica napus]
11 Hb_036356_010 0.157710149 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
12 Hb_008959_050 0.1664521609 transcription factor TF Family: Orphans PREDICTED: late secretory pathway protein AVL9-like isoform X2 [Jatropha curcas]
13 Hb_000022_280 0.1668121765 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]
14 Hb_000046_590 0.1755917862 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
15 Hb_000720_110 0.1777560976 - - hypothetical protein JCGZ_20628 [Jatropha curcas]
16 Hb_000692_180 0.1792777696 - - PREDICTED: uncharacterized protein At1g76070 [Jatropha curcas]
17 Hb_003050_050 0.1792841249 - - hypothetical protein JCGZ_04619 [Jatropha curcas]
18 Hb_166009_010 0.1807246185 - - carbonyl reductase, putative [Ricinus communis]
19 Hb_005144_100 0.1810522434 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
20 Hb_000993_020 0.1839144704 - - PREDICTED: indole-3-pyruvate monooxygenase YUCCA6 [Jatropha curcas]

Gene co-expression network

sample Hb_001922_020 Hb_001922_020 Hb_002217_210 Hb_002217_210 Hb_001922_020--Hb_002217_210 Hb_003768_110 Hb_003768_110 Hb_001922_020--Hb_003768_110 Hb_004452_080 Hb_004452_080 Hb_001922_020--Hb_004452_080 Hb_002044_110 Hb_002044_110 Hb_001922_020--Hb_002044_110 Hb_003413_020 Hb_003413_020 Hb_001922_020--Hb_003413_020 Hb_002236_070 Hb_002236_070 Hb_001922_020--Hb_002236_070 Hb_004635_040 Hb_004635_040 Hb_002217_210--Hb_004635_040 Hb_005144_100 Hb_005144_100 Hb_002217_210--Hb_005144_100 Hb_002217_210--Hb_002044_110 Hb_010614_020 Hb_010614_020 Hb_002217_210--Hb_010614_020 Hb_008959_050 Hb_008959_050 Hb_002217_210--Hb_008959_050 Hb_000993_020 Hb_000993_020 Hb_003768_110--Hb_000993_020 Hb_003768_110--Hb_002217_210 Hb_001002_090 Hb_001002_090 Hb_003768_110--Hb_001002_090 Hb_000979_080 Hb_000979_080 Hb_003768_110--Hb_000979_080 Hb_001416_170 Hb_001416_170 Hb_003768_110--Hb_001416_170 Hb_008705_040 Hb_008705_040 Hb_004452_080--Hb_008705_040 Hb_022998_010 Hb_022998_010 Hb_004452_080--Hb_022998_010 Hb_004021_100 Hb_004021_100 Hb_004452_080--Hb_004021_100 Hb_007432_050 Hb_007432_050 Hb_004452_080--Hb_007432_050 Hb_017491_040 Hb_017491_040 Hb_004452_080--Hb_017491_040 Hb_004452_080--Hb_002236_070 Hb_002044_110--Hb_010614_020 Hb_004218_220 Hb_004218_220 Hb_002044_110--Hb_004218_220 Hb_002044_110--Hb_004635_040 Hb_036356_010 Hb_036356_010 Hb_002044_110--Hb_036356_010 Hb_002044_110--Hb_008959_050 Hb_001288_020 Hb_001288_020 Hb_003413_020--Hb_001288_020 Hb_002157_100 Hb_002157_100 Hb_003413_020--Hb_002157_100 Hb_008080_030 Hb_008080_030 Hb_003413_020--Hb_008080_030 Hb_004703_010 Hb_004703_010 Hb_003413_020--Hb_004703_010 Hb_001005_170 Hb_001005_170 Hb_003413_020--Hb_001005_170 Hb_000407_080 Hb_000407_080 Hb_002236_070--Hb_000407_080 Hb_006020_010 Hb_006020_010 Hb_002236_070--Hb_006020_010 Hb_002236_070--Hb_004635_040 Hb_013914_020 Hb_013914_020 Hb_002236_070--Hb_013914_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.255267 0.209409 0.232152 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.34963 0

CAGE analysis