Hb_002044_110

Information

Type -
Description -
Location Contig2044: 111664-112593
Sequence    

Annotation

kegg
ID pop:POPTR_0009s10800g
description POPTRDRAFT_722183; hypothetical protein
nr
ID XP_011015827.1
description PREDICTED: probable carboxylesterase 5 isoform X1 [Populus euphratica]
swissprot
ID Q9ZQ91
description Probable carboxylesterase 7 OS=Arabidopsis thaliana GN=CXE7 PE=2 SV=1
trembl
ID B9HRY0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s10800g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21010: 112108-112630
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002044_110 0.0 - - PREDICTED: probable carboxylesterase 5 isoform X1 [Populus euphratica]
2 Hb_010614_020 0.0991783968 - - BnaC05g27570D [Brassica napus]
3 Hb_002217_210 0.1032285141 - - -
4 Hb_004218_220 0.1071717798 - - o-methyltransferase, putative [Ricinus communis]
5 Hb_004635_040 0.1071745289 - - Polyprotein, putative [Solanum demissum]
6 Hb_036356_010 0.1151370161 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
7 Hb_008959_050 0.1152253669 transcription factor TF Family: Orphans PREDICTED: late secretory pathway protein AVL9-like isoform X2 [Jatropha curcas]
8 Hb_011206_050 0.121436142 - - hypothetical protein POPTR_0011s02840g [Populus trichocarpa]
9 Hb_002894_040 0.1295943427 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007403_010 0.1415944833 - - hypothetical protein JCGZ_11090 [Jatropha curcas]
11 Hb_005144_100 0.1423867669 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
12 Hb_001922_020 0.1442017829 - - conserved hypothetical protein [Ricinus communis]
13 Hb_036176_010 0.1569389534 - - hypothetical protein CISIN_1g002055mg [Citrus sinensis]
14 Hb_010573_040 0.1613902337 - - PREDICTED: zinc-metallopeptidase, peroxisomal isoform X2 [Populus euphratica]
15 Hb_042491_010 0.1634781381 - - JHL06P13.14 [Jatropha curcas]
16 Hb_000172_310 0.1656799819 - - PREDICTED: fasciclin-like arabinogalactan protein 21 [Jatropha curcas]
17 Hb_000108_040 0.1657855448 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Gossypium raimondii]
18 Hb_055147_020 0.1676162604 - - hypothetical protein EUGRSUZ_C03837 [Eucalyptus grandis]
19 Hb_000566_170 0.1679599465 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL9 homolog isoform X4 [Jatropha curcas]
20 Hb_006020_010 0.1759611951 - - PREDICTED: probable disease resistance protein At4g27220 [Jatropha curcas]

Gene co-expression network

sample Hb_002044_110 Hb_002044_110 Hb_010614_020 Hb_010614_020 Hb_002044_110--Hb_010614_020 Hb_002217_210 Hb_002217_210 Hb_002044_110--Hb_002217_210 Hb_004218_220 Hb_004218_220 Hb_002044_110--Hb_004218_220 Hb_004635_040 Hb_004635_040 Hb_002044_110--Hb_004635_040 Hb_036356_010 Hb_036356_010 Hb_002044_110--Hb_036356_010 Hb_008959_050 Hb_008959_050 Hb_002044_110--Hb_008959_050 Hb_010614_020--Hb_004635_040 Hb_007403_010 Hb_007403_010 Hb_010614_020--Hb_007403_010 Hb_010614_020--Hb_036356_010 Hb_002894_040 Hb_002894_040 Hb_010614_020--Hb_002894_040 Hb_010614_020--Hb_002217_210 Hb_002217_210--Hb_004635_040 Hb_005144_100 Hb_005144_100 Hb_002217_210--Hb_005144_100 Hb_001922_020 Hb_001922_020 Hb_002217_210--Hb_001922_020 Hb_002217_210--Hb_008959_050 Hb_000172_310 Hb_000172_310 Hb_004218_220--Hb_000172_310 Hb_004218_220--Hb_002894_040 Hb_004218_220--Hb_008959_050 Hb_055147_020 Hb_055147_020 Hb_004218_220--Hb_055147_020 Hb_011206_050 Hb_011206_050 Hb_004218_220--Hb_011206_050 Hb_004635_040--Hb_007403_010 Hb_004635_040--Hb_005144_100 Hb_004635_040--Hb_036356_010 Hb_036356_010--Hb_007403_010 Hb_010573_040 Hb_010573_040 Hb_036356_010--Hb_010573_040 Hb_036356_010--Hb_008959_050 Hb_008959_050--Hb_010573_040 Hb_008959_050--Hb_002894_040 Hb_008959_050--Hb_005144_100 Hb_008959_050--Hb_010614_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0684388 2.22821 1.32692 2.8205 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.97887 0

CAGE analysis