Hb_011206_050

Information

Type -
Description -
Location Contig11206: 36532-38198
Sequence    

Annotation

kegg
ID pop:POPTR_0011s02840g
description POPTRDRAFT_887818; hypothetical protein
nr
ID XP_002317303.2
description hypothetical protein POPTR_0011s02840g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9I112
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s02840g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03644: 36350-36852
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011206_050 0.0 - - hypothetical protein POPTR_0011s02840g [Populus trichocarpa]
2 Hb_000566_170 0.1147617716 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL9 homolog isoform X4 [Jatropha curcas]
3 Hb_002044_110 0.121436142 - - PREDICTED: probable carboxylesterase 5 isoform X1 [Populus euphratica]
4 Hb_000510_210 0.1231334187 - - PREDICTED: phospholipase A1-Igamma1, chloroplastic-like [Jatropha curcas]
5 Hb_004218_220 0.1335367034 - - o-methyltransferase, putative [Ricinus communis]
6 Hb_000975_130 0.1428283127 - - PREDICTED: uncharacterized protein LOC104445138 [Eucalyptus grandis]
7 Hb_000956_060 0.1434009426 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
8 Hb_042491_010 0.1456795652 - - JHL06P13.14 [Jatropha curcas]
9 Hb_106728_020 0.1459009046 - - cytochrome P450, putative [Ricinus communis]
10 Hb_036176_010 0.1466029458 - - hypothetical protein CISIN_1g002055mg [Citrus sinensis]
11 Hb_004631_030 0.1482505723 - - PREDICTED: putative clathrin assembly protein At4g40080 [Jatropha curcas]
12 Hb_012516_030 0.1541722492 - - PREDICTED: non-specific lipid-transfer protein 2 {ECO:0000303
13 Hb_000172_310 0.1561369959 - - PREDICTED: fasciclin-like arabinogalactan protein 21 [Jatropha curcas]
14 Hb_005144_100 0.157494674 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
15 Hb_002217_210 0.1614178512 - - -
16 Hb_055147_020 0.1645434766 - - hypothetical protein EUGRSUZ_C03837 [Eucalyptus grandis]
17 Hb_002894_040 0.1657146156 - - conserved hypothetical protein [Ricinus communis]
18 Hb_009627_020 0.1689014077 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 34 [Jatropha curcas]
19 Hb_000270_550 0.1715910228 - - -
20 Hb_008959_050 0.1734379152 transcription factor TF Family: Orphans PREDICTED: late secretory pathway protein AVL9-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_011206_050 Hb_011206_050 Hb_000566_170 Hb_000566_170 Hb_011206_050--Hb_000566_170 Hb_002044_110 Hb_002044_110 Hb_011206_050--Hb_002044_110 Hb_000510_210 Hb_000510_210 Hb_011206_050--Hb_000510_210 Hb_004218_220 Hb_004218_220 Hb_011206_050--Hb_004218_220 Hb_000975_130 Hb_000975_130 Hb_011206_050--Hb_000975_130 Hb_000956_060 Hb_000956_060 Hb_011206_050--Hb_000956_060 Hb_000566_170--Hb_000510_210 Hb_106728_020 Hb_106728_020 Hb_000566_170--Hb_106728_020 Hb_004631_030 Hb_004631_030 Hb_000566_170--Hb_004631_030 Hb_179118_010 Hb_179118_010 Hb_000566_170--Hb_179118_010 Hb_012516_030 Hb_012516_030 Hb_000566_170--Hb_012516_030 Hb_010614_020 Hb_010614_020 Hb_002044_110--Hb_010614_020 Hb_002217_210 Hb_002217_210 Hb_002044_110--Hb_002217_210 Hb_002044_110--Hb_004218_220 Hb_004635_040 Hb_004635_040 Hb_002044_110--Hb_004635_040 Hb_036356_010 Hb_036356_010 Hb_002044_110--Hb_036356_010 Hb_008959_050 Hb_008959_050 Hb_002044_110--Hb_008959_050 Hb_000510_210--Hb_106728_020 Hb_000510_210--Hb_004631_030 Hb_000510_210--Hb_179118_010 Hb_000510_210--Hb_012516_030 Hb_000172_310 Hb_000172_310 Hb_004218_220--Hb_000172_310 Hb_002894_040 Hb_002894_040 Hb_004218_220--Hb_002894_040 Hb_004218_220--Hb_008959_050 Hb_055147_020 Hb_055147_020 Hb_004218_220--Hb_055147_020 Hb_000975_130--Hb_000956_060 Hb_003811_050 Hb_003811_050 Hb_000975_130--Hb_003811_050 Hb_005672_030 Hb_005672_030 Hb_000975_130--Hb_005672_030 Hb_000853_010 Hb_000853_010 Hb_000975_130--Hb_000853_010 Hb_000676_130 Hb_000676_130 Hb_000975_130--Hb_000676_130 Hb_000975_130--Hb_004631_030 Hb_000297_220 Hb_000297_220 Hb_000956_060--Hb_000297_220 Hb_000956_060--Hb_004631_030 Hb_000956_060--Hb_012516_030 Hb_000956_060--Hb_003811_050 Hb_000956_060--Hb_000676_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0274116 0.285199 0.189153 0.70111 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.340257 0

CAGE analysis