Hb_179118_010

Information

Type -
Description -
Location Contig179118: 6618-7970
Sequence    

Annotation

kegg
ID pop:POPTR_0010s18980g
description POPTRDRAFT_833746; hypothetical protein
nr
ID XP_012081690.1
description PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
swissprot
ID Q66PF2
description Putative UDP-rhamnose:rhamnosyltransferase 1 OS=Fragaria ananassa GN=GT4 PE=2 SV=1
trembl
ID A0A067K0Q8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18726 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_179118_010 0.0 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
2 Hb_004590_010 0.0327856495 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
3 Hb_012395_150 0.0775502532 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
4 Hb_106728_020 0.0846365017 - - cytochrome P450, putative [Ricinus communis]
5 Hb_000510_210 0.0976748981 - - PREDICTED: phospholipase A1-Igamma1, chloroplastic-like [Jatropha curcas]
6 Hb_012879_010 0.1016949133 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005900_020 0.1050398679 - - -
8 Hb_000566_170 0.1054514829 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL9 homolog isoform X4 [Jatropha curcas]
9 Hb_000002_230 0.1147950103 - - RING/U-box superfamily protein [Theobroma cacao]
10 Hb_183820_010 0.1357234312 - - Disease resistance protein RFL1, putative [Ricinus communis]
11 Hb_002894_040 0.1392097133 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001369_530 0.1403030463 - - 21 kDa protein precursor, putative [Ricinus communis]
13 Hb_000270_550 0.1434021874 - - -
14 Hb_000504_050 0.1436162673 transcription factor TF Family: LOB LOB domain protein 25 [Populus trichocarpa]
15 Hb_105446_010 0.1463181312 - - -
16 Hb_017661_020 0.147481803 - - hypothetical protein JCGZ_11176 [Jatropha curcas]
17 Hb_148914_020 0.1485471775 - - PREDICTED: uncharacterized protein LOC105637821 [Jatropha curcas]
18 Hb_007313_050 0.1523309635 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
19 Hb_000203_150 0.1526631478 - - PREDICTED: uncharacterized protein LOC105116038 [Populus euphratica]
20 Hb_112011_010 0.1537220044 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_179118_010 Hb_179118_010 Hb_004590_010 Hb_004590_010 Hb_179118_010--Hb_004590_010 Hb_012395_150 Hb_012395_150 Hb_179118_010--Hb_012395_150 Hb_106728_020 Hb_106728_020 Hb_179118_010--Hb_106728_020 Hb_000510_210 Hb_000510_210 Hb_179118_010--Hb_000510_210 Hb_012879_010 Hb_012879_010 Hb_179118_010--Hb_012879_010 Hb_005900_020 Hb_005900_020 Hb_179118_010--Hb_005900_020 Hb_004590_010--Hb_012395_150 Hb_004590_010--Hb_012879_010 Hb_004590_010--Hb_005900_020 Hb_004590_010--Hb_106728_020 Hb_000002_230 Hb_000002_230 Hb_004590_010--Hb_000002_230 Hb_006395_010 Hb_006395_010 Hb_012395_150--Hb_006395_010 Hb_017661_020 Hb_017661_020 Hb_012395_150--Hb_017661_020 Hb_012395_150--Hb_012879_010 Hb_183820_010 Hb_183820_010 Hb_012395_150--Hb_183820_010 Hb_106728_020--Hb_000510_210 Hb_000566_170 Hb_000566_170 Hb_106728_020--Hb_000566_170 Hb_148914_020 Hb_148914_020 Hb_106728_020--Hb_148914_020 Hb_106728_020--Hb_005900_020 Hb_000510_210--Hb_000566_170 Hb_004631_030 Hb_004631_030 Hb_000510_210--Hb_004631_030 Hb_012516_030 Hb_012516_030 Hb_000510_210--Hb_012516_030 Hb_011206_050 Hb_011206_050 Hb_000510_210--Hb_011206_050 Hb_000658_020 Hb_000658_020 Hb_012879_010--Hb_000658_020 Hb_112011_010 Hb_112011_010 Hb_012879_010--Hb_112011_010 Hb_105446_010 Hb_105446_010 Hb_012879_010--Hb_105446_010 Hb_004724_010 Hb_004724_010 Hb_012879_010--Hb_004724_010 Hb_017866_010 Hb_017866_010 Hb_012879_010--Hb_017866_010 Hb_066350_010 Hb_066350_010 Hb_005900_020--Hb_066350_010 Hb_005900_020--Hb_148914_020 Hb_021443_020 Hb_021443_020 Hb_005900_020--Hb_021443_020 Hb_035006_010 Hb_035006_010 Hb_005900_020--Hb_035006_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.104622 0.0150301 0.169955 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0686444 0

CAGE analysis