Hb_112011_010

Information

Type -
Description -
Location Contig112011: 6444-6860
Sequence    

Annotation

kegg
ID rcu:RCOM_0304060
description hypothetical protein
nr
ID XP_012086191.1
description PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JQ32
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21104 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_112011_010 0.0 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
2 Hb_000658_020 0.0216648837 - - PREDICTED: UDP-glucuronate 4-epimerase 1 [Musa acuminata subsp. malaccensis]
3 Hb_004724_010 0.0260194782 - - -
4 Hb_017866_010 0.0312893818 - - kinase family protein [Populus trichocarpa]
5 Hb_105446_010 0.0466274076 - - -
6 Hb_000751_210 0.0642187863 - - PREDICTED: petal death protein isoform X2 [Jatropha curcas]
7 Hb_132438_010 0.0703611771 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
8 Hb_012879_010 0.0909847758 - - conserved hypothetical protein [Ricinus communis]
9 Hb_009543_040 0.0954357568 - - -
10 Hb_001157_130 0.0972384085 - - PREDICTED: transmembrane protein 45B-like [Jatropha curcas]
11 Hb_062226_080 0.1061420995 - - -
12 Hb_060272_010 0.1063899718 - - PREDICTED: gibberellin 20 oxidase 2 [Populus euphratica]
13 Hb_005888_040 0.1079917705 - - PREDICTED: gibberellin 20 oxidase 2 [Jatropha curcas]
14 Hb_015026_010 0.1122516786 - - -
15 Hb_000146_100 0.1260871828 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000059_110 0.1272094178 transcription factor TF Family: MYB MYB transcriptional factor [Populus tremula x Populus tremuloides]
17 Hb_002267_040 0.1299881926 - - -
18 Hb_009252_110 0.1302367634 - - hypothetical protein JCGZ_11492 [Jatropha curcas]
19 Hb_086122_030 0.1325888191 - - D-glycerate 3-kinase, chloroplast precursor, putative [Ricinus communis]
20 Hb_000575_010 0.1347640891 - - PREDICTED: uncharacterized protein LOC103454030 [Malus domestica]

Gene co-expression network

sample Hb_112011_010 Hb_112011_010 Hb_000658_020 Hb_000658_020 Hb_112011_010--Hb_000658_020 Hb_004724_010 Hb_004724_010 Hb_112011_010--Hb_004724_010 Hb_017866_010 Hb_017866_010 Hb_112011_010--Hb_017866_010 Hb_105446_010 Hb_105446_010 Hb_112011_010--Hb_105446_010 Hb_000751_210 Hb_000751_210 Hb_112011_010--Hb_000751_210 Hb_132438_010 Hb_132438_010 Hb_112011_010--Hb_132438_010 Hb_000658_020--Hb_004724_010 Hb_000658_020--Hb_017866_010 Hb_000658_020--Hb_105446_010 Hb_000658_020--Hb_000751_210 Hb_012879_010 Hb_012879_010 Hb_000658_020--Hb_012879_010 Hb_004724_010--Hb_017866_010 Hb_004724_010--Hb_105446_010 Hb_004724_010--Hb_000751_210 Hb_004724_010--Hb_012879_010 Hb_017866_010--Hb_132438_010 Hb_017866_010--Hb_000751_210 Hb_017866_010--Hb_105446_010 Hb_105446_010--Hb_000751_210 Hb_105446_010--Hb_132438_010 Hb_000751_210--Hb_132438_010 Hb_009543_040 Hb_009543_040 Hb_000751_210--Hb_009543_040 Hb_001157_130 Hb_001157_130 Hb_000751_210--Hb_001157_130 Hb_132438_010--Hb_009543_040 Hb_132438_010--Hb_001157_130 Hb_000575_010 Hb_000575_010 Hb_132438_010--Hb_000575_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.067981 0 0.133087 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0615318 0

CAGE analysis