Hb_012879_010

Information

Type -
Description -
Location Contig12879: 25635-25904
Sequence    

Annotation

kegg
ID rcu:RCOM_1776830
description hypothetical protein
nr
ID XP_002512204.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9REN5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1776830 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08761: 25462-26132
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012879_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000658_020 0.0894613213 - - PREDICTED: UDP-glucuronate 4-epimerase 1 [Musa acuminata subsp. malaccensis]
3 Hb_112011_010 0.0909847758 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
4 Hb_105446_010 0.0918727719 - - -
5 Hb_004724_010 0.0926611394 - - -
6 Hb_179118_010 0.1016949133 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
7 Hb_017866_010 0.1019622472 - - kinase family protein [Populus trichocarpa]
8 Hb_004590_010 0.1032538694 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
9 Hb_000504_050 0.1046675127 transcription factor TF Family: LOB LOB domain protein 25 [Populus trichocarpa]
10 Hb_012395_150 0.1085808539 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
11 Hb_000751_210 0.1085866623 - - PREDICTED: petal death protein isoform X2 [Jatropha curcas]
12 Hb_062226_080 0.1152178387 - - -
13 Hb_005888_040 0.1166284205 - - PREDICTED: gibberellin 20 oxidase 2 [Jatropha curcas]
14 Hb_132438_010 0.1167199352 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
15 Hb_015026_010 0.1204147828 - - -
16 Hb_000059_110 0.1296031792 transcription factor TF Family: MYB MYB transcriptional factor [Populus tremula x Populus tremuloides]
17 Hb_002267_040 0.1322718477 - - -
18 Hb_009252_110 0.1340649246 - - hypothetical protein JCGZ_11492 [Jatropha curcas]
19 Hb_066350_010 0.1345805883 - - somatic embryogenesis receptor-like kinase 4, partial [Rosa hybrid cultivar]
20 Hb_009543_040 0.1347966426 - - -

Gene co-expression network

sample Hb_012879_010 Hb_012879_010 Hb_000658_020 Hb_000658_020 Hb_012879_010--Hb_000658_020 Hb_112011_010 Hb_112011_010 Hb_012879_010--Hb_112011_010 Hb_105446_010 Hb_105446_010 Hb_012879_010--Hb_105446_010 Hb_004724_010 Hb_004724_010 Hb_012879_010--Hb_004724_010 Hb_179118_010 Hb_179118_010 Hb_012879_010--Hb_179118_010 Hb_017866_010 Hb_017866_010 Hb_012879_010--Hb_017866_010 Hb_000658_020--Hb_004724_010 Hb_000658_020--Hb_112011_010 Hb_000658_020--Hb_017866_010 Hb_000658_020--Hb_105446_010 Hb_000751_210 Hb_000751_210 Hb_000658_020--Hb_000751_210 Hb_112011_010--Hb_004724_010 Hb_112011_010--Hb_017866_010 Hb_112011_010--Hb_105446_010 Hb_112011_010--Hb_000751_210 Hb_132438_010 Hb_132438_010 Hb_112011_010--Hb_132438_010 Hb_105446_010--Hb_000751_210 Hb_105446_010--Hb_017866_010 Hb_105446_010--Hb_132438_010 Hb_105446_010--Hb_004724_010 Hb_004724_010--Hb_017866_010 Hb_004724_010--Hb_000751_210 Hb_004590_010 Hb_004590_010 Hb_179118_010--Hb_004590_010 Hb_012395_150 Hb_012395_150 Hb_179118_010--Hb_012395_150 Hb_106728_020 Hb_106728_020 Hb_179118_010--Hb_106728_020 Hb_000510_210 Hb_000510_210 Hb_179118_010--Hb_000510_210 Hb_005900_020 Hb_005900_020 Hb_179118_010--Hb_005900_020 Hb_017866_010--Hb_132438_010 Hb_017866_010--Hb_000751_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 67.2778 2.59626 126.774 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.49665 0 0 50.4333 0.5665

CAGE analysis