Hb_012395_150

Information

Type transcription factor
Description TF Family: Orphans
Location Contig12395: 71129-73102
Sequence    

Annotation

kegg
ID rcu:RCOM_1217770
description hypothetical protein
nr
ID XP_012077595.1
description PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
swissprot
ID Q940T9
description Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2
trembl
ID A0A067KB16
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12861 PE=4 SV=1
Gene Ontology
ID GO:0016787
description cct motif family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07275: 71008-71405 , PASA_asmbl_07276: 71718-72421
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012395_150 0.0 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
2 Hb_004590_010 0.0744090075 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
3 Hb_179118_010 0.0775502532 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
4 Hb_006395_010 0.0993166161 - - hypothetical protein RCOM_0725500 [Ricinus communis]
5 Hb_017661_020 0.1049800834 - - hypothetical protein JCGZ_11176 [Jatropha curcas]
6 Hb_012879_010 0.1085808539 - - conserved hypothetical protein [Ricinus communis]
7 Hb_183820_010 0.1144140505 - - Disease resistance protein RFL1, putative [Ricinus communis]
8 Hb_132438_010 0.1194370108 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
9 Hb_009543_040 0.1218341347 - - -
10 Hb_000751_210 0.1218484236 - - PREDICTED: petal death protein isoform X2 [Jatropha curcas]
11 Hb_002762_070 0.1245421343 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
12 Hb_000365_290 0.1268380595 - - PREDICTED: protein MTL1-like isoform X1 [Jatropha curcas]
13 Hb_017866_010 0.1272475138 - - kinase family protein [Populus trichocarpa]
14 Hb_001157_130 0.1278024464 - - PREDICTED: transmembrane protein 45B-like [Jatropha curcas]
15 Hb_001369_530 0.1337901847 - - 21 kDa protein precursor, putative [Ricinus communis]
16 Hb_105446_010 0.1339110959 - - -
17 Hb_027445_080 0.1348022473 transcription factor TF Family: LOB LOB domain protein 25 [Populus trichocarpa]
18 Hb_000504_050 0.1351297487 transcription factor TF Family: LOB LOB domain protein 25 [Populus trichocarpa]
19 Hb_000575_010 0.1355664599 - - PREDICTED: uncharacterized protein LOC103454030 [Malus domestica]
20 Hb_000616_060 0.1371420902 - - -

Gene co-expression network

sample Hb_012395_150 Hb_012395_150 Hb_004590_010 Hb_004590_010 Hb_012395_150--Hb_004590_010 Hb_179118_010 Hb_179118_010 Hb_012395_150--Hb_179118_010 Hb_006395_010 Hb_006395_010 Hb_012395_150--Hb_006395_010 Hb_017661_020 Hb_017661_020 Hb_012395_150--Hb_017661_020 Hb_012879_010 Hb_012879_010 Hb_012395_150--Hb_012879_010 Hb_183820_010 Hb_183820_010 Hb_012395_150--Hb_183820_010 Hb_004590_010--Hb_179118_010 Hb_004590_010--Hb_012879_010 Hb_005900_020 Hb_005900_020 Hb_004590_010--Hb_005900_020 Hb_106728_020 Hb_106728_020 Hb_004590_010--Hb_106728_020 Hb_000002_230 Hb_000002_230 Hb_004590_010--Hb_000002_230 Hb_179118_010--Hb_106728_020 Hb_000510_210 Hb_000510_210 Hb_179118_010--Hb_000510_210 Hb_179118_010--Hb_012879_010 Hb_179118_010--Hb_005900_020 Hb_000365_290 Hb_000365_290 Hb_006395_010--Hb_000365_290 Hb_001998_260 Hb_001998_260 Hb_006395_010--Hb_001998_260 Hb_005144_100 Hb_005144_100 Hb_006395_010--Hb_005144_100 Hb_004635_040 Hb_004635_040 Hb_006395_010--Hb_004635_040 Hb_002762_070 Hb_002762_070 Hb_006395_010--Hb_002762_070 Hb_027445_080 Hb_027445_080 Hb_017661_020--Hb_027445_080 Hb_017661_020--Hb_002762_070 Hb_000127_070 Hb_000127_070 Hb_017661_020--Hb_000127_070 Hb_005203_010 Hb_005203_010 Hb_017661_020--Hb_005203_010 Hb_004218_230 Hb_004218_230 Hb_017661_020--Hb_004218_230 Hb_000658_020 Hb_000658_020 Hb_012879_010--Hb_000658_020 Hb_112011_010 Hb_112011_010 Hb_012879_010--Hb_112011_010 Hb_105446_010 Hb_105446_010 Hb_012879_010--Hb_105446_010 Hb_004724_010 Hb_004724_010 Hb_012879_010--Hb_004724_010 Hb_017866_010 Hb_017866_010 Hb_012879_010--Hb_017866_010 Hb_136884_010 Hb_136884_010 Hb_183820_010--Hb_136884_010 Hb_183820_010--Hb_000002_230 Hb_183820_010--Hb_000365_290 Hb_006020_010 Hb_006020_010 Hb_183820_010--Hb_006020_010 Hb_183820_010--Hb_004590_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.141604 0.0131709 0.193309 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.120179 0

CAGE analysis