Hb_000658_020

Information

Type -
Description -
Location Contig658: 71075-72344
Sequence    

Annotation

kegg
ID ppp:PHYPADRAFT_60904
description hypothetical protein
nr
ID XP_009417460.1
description PREDICTED: UDP-glucuronate 4-epimerase 1 [Musa acuminata subsp. malaccensis]
swissprot
ID Q9M0B6
description UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thaliana GN=GAE1 PE=1 SV=1
trembl
ID M0U008
description Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1
Gene Ontology
ID GO:0016857
description udp-glucuronate 4-epimerase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000658_020 0.0 - - PREDICTED: UDP-glucuronate 4-epimerase 1 [Musa acuminata subsp. malaccensis]
2 Hb_004724_010 0.0100112067 - - -
3 Hb_112011_010 0.0216648837 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
4 Hb_017866_010 0.052920777 - - kinase family protein [Populus trichocarpa]
5 Hb_105446_010 0.0538714275 - - -
6 Hb_000751_210 0.081061742 - - PREDICTED: petal death protein isoform X2 [Jatropha curcas]
7 Hb_012879_010 0.0894613213 - - conserved hypothetical protein [Ricinus communis]
8 Hb_132438_010 0.0897917174 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
9 Hb_062226_080 0.0962131655 - - -
10 Hb_015026_010 0.0963071081 - - -
11 Hb_005888_040 0.0995601766 - - PREDICTED: gibberellin 20 oxidase 2 [Jatropha curcas]
12 Hb_000146_100 0.1056328775 - - conserved hypothetical protein [Ricinus communis]
13 Hb_009543_040 0.1151073472 - - -
14 Hb_001157_130 0.1187791006 - - PREDICTED: transmembrane protein 45B-like [Jatropha curcas]
15 Hb_002267_040 0.1193210571 - - -
16 Hb_000059_110 0.1201774958 transcription factor TF Family: MYB MYB transcriptional factor [Populus tremula x Populus tremuloides]
17 Hb_009252_110 0.126059321 - - hypothetical protein JCGZ_11492 [Jatropha curcas]
18 Hb_060272_010 0.1262262415 - - PREDICTED: gibberellin 20 oxidase 2 [Populus euphratica]
19 Hb_000504_050 0.1401959028 transcription factor TF Family: LOB LOB domain protein 25 [Populus trichocarpa]
20 Hb_000501_090 0.1445308116 - - -

Gene co-expression network

sample Hb_000658_020 Hb_000658_020 Hb_004724_010 Hb_004724_010 Hb_000658_020--Hb_004724_010 Hb_112011_010 Hb_112011_010 Hb_000658_020--Hb_112011_010 Hb_017866_010 Hb_017866_010 Hb_000658_020--Hb_017866_010 Hb_105446_010 Hb_105446_010 Hb_000658_020--Hb_105446_010 Hb_000751_210 Hb_000751_210 Hb_000658_020--Hb_000751_210 Hb_012879_010 Hb_012879_010 Hb_000658_020--Hb_012879_010 Hb_004724_010--Hb_112011_010 Hb_004724_010--Hb_017866_010 Hb_004724_010--Hb_105446_010 Hb_004724_010--Hb_000751_210 Hb_004724_010--Hb_012879_010 Hb_112011_010--Hb_017866_010 Hb_112011_010--Hb_105446_010 Hb_112011_010--Hb_000751_210 Hb_132438_010 Hb_132438_010 Hb_112011_010--Hb_132438_010 Hb_017866_010--Hb_132438_010 Hb_017866_010--Hb_000751_210 Hb_017866_010--Hb_105446_010 Hb_105446_010--Hb_000751_210 Hb_105446_010--Hb_132438_010 Hb_000751_210--Hb_132438_010 Hb_009543_040 Hb_009543_040 Hb_000751_210--Hb_009543_040 Hb_001157_130 Hb_001157_130 Hb_000751_210--Hb_001157_130 Hb_012879_010--Hb_112011_010 Hb_012879_010--Hb_105446_010 Hb_179118_010 Hb_179118_010 Hb_012879_010--Hb_179118_010 Hb_012879_010--Hb_017866_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.020809 0 0.0441467 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0181203 0

CAGE analysis