Hb_001157_130

Information

Type -
Description -
Location Contig1157: 82673-83635
Sequence    

Annotation

kegg
ID rcu:RCOM_1455230
description hypothetical protein
nr
ID XP_012093326.1
description PREDICTED: transmembrane protein 45B-like [Jatropha curcas]
swissprot
ID Q3T130
description Transmembrane protein 45B OS=Bos taurus GN=TMEM45B PE=2 SV=1
trembl
ID A0A067LIB7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19207 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001157_130 0.0 - - PREDICTED: transmembrane protein 45B-like [Jatropha curcas]
2 Hb_060272_010 0.0397489983 - - PREDICTED: gibberellin 20 oxidase 2 [Populus euphratica]
3 Hb_009543_040 0.0497124906 - - -
4 Hb_132438_010 0.0537687525 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
5 Hb_000575_010 0.0564574029 - - PREDICTED: uncharacterized protein LOC103454030 [Malus domestica]
6 Hb_000616_060 0.0582662716 - - -
7 Hb_000155_270 0.0584631651 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF098 [Jatropha curcas]
8 Hb_000891_060 0.0623945224 - - hypothetical protein JCGZ_11234 [Jatropha curcas]
9 Hb_017866_010 0.0660283742 - - kinase family protein [Populus trichocarpa]
10 Hb_002282_030 0.0694399965 - - -
11 Hb_000751_210 0.0718085931 - - PREDICTED: petal death protein isoform X2 [Jatropha curcas]
12 Hb_086122_030 0.0855511751 - - D-glycerate 3-kinase, chloroplast precursor, putative [Ricinus communis]
13 Hb_112011_010 0.0972384085 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
14 Hb_105446_010 0.1044908302 - - -
15 Hb_007850_040 0.1067986555 - - conserved hypothetical protein [Ricinus communis]
16 Hb_161981_010 0.1071756101 - - brassinosteroid insensitive 1 -like protein [Gossypium arboreum]
17 Hb_006268_010 0.10961119 - - hypothetical protein EUGRSUZ_B00966 [Eucalyptus grandis]
18 Hb_000658_020 0.1187791006 - - PREDICTED: UDP-glucuronate 4-epimerase 1 [Musa acuminata subsp. malaccensis]
19 Hb_004724_010 0.1212223227 - - -
20 Hb_012395_150 0.1278024464 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]

Gene co-expression network

sample Hb_001157_130 Hb_001157_130 Hb_060272_010 Hb_060272_010 Hb_001157_130--Hb_060272_010 Hb_009543_040 Hb_009543_040 Hb_001157_130--Hb_009543_040 Hb_132438_010 Hb_132438_010 Hb_001157_130--Hb_132438_010 Hb_000575_010 Hb_000575_010 Hb_001157_130--Hb_000575_010 Hb_000616_060 Hb_000616_060 Hb_001157_130--Hb_000616_060 Hb_000155_270 Hb_000155_270 Hb_001157_130--Hb_000155_270 Hb_060272_010--Hb_000155_270 Hb_086122_030 Hb_086122_030 Hb_060272_010--Hb_086122_030 Hb_161981_010 Hb_161981_010 Hb_060272_010--Hb_161981_010 Hb_017866_010 Hb_017866_010 Hb_060272_010--Hb_017866_010 Hb_060272_010--Hb_132438_010 Hb_009543_040--Hb_132438_010 Hb_000751_210 Hb_000751_210 Hb_009543_040--Hb_000751_210 Hb_009543_040--Hb_000575_010 Hb_009543_040--Hb_000616_060 Hb_000891_060 Hb_000891_060 Hb_009543_040--Hb_000891_060 Hb_132438_010--Hb_000751_210 Hb_132438_010--Hb_017866_010 Hb_105446_010 Hb_105446_010 Hb_132438_010--Hb_105446_010 Hb_132438_010--Hb_000575_010 Hb_000575_010--Hb_000616_060 Hb_000575_010--Hb_000891_060 Hb_002282_030 Hb_002282_030 Hb_000575_010--Hb_002282_030 Hb_000616_060--Hb_000891_060 Hb_000616_060--Hb_002282_030 Hb_000616_060--Hb_132438_010 Hb_006268_010 Hb_006268_010 Hb_000155_270--Hb_006268_010 Hb_007850_040 Hb_007850_040 Hb_000155_270--Hb_007850_040 Hb_000155_270--Hb_086122_030 Hb_000155_270--Hb_161981_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.15469 0 0.21346 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.168177 0

CAGE analysis