Hb_086122_030

Information

Type -
Description -
Location Contig86122: 3716-4657
Sequence    

Annotation

kegg
ID rcu:RCOM_0895280
description D-glycerate 3-kinase, chloroplast precursor, putative (EC:2.7.1.31)
nr
ID XP_002517532.1
description D-glycerate 3-kinase, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q944I4
description D-glycerate 3-kinase, chloroplastic OS=Arabidopsis thaliana GN=GLYK PE=1 SV=2
trembl
ID B9RUW3
description D-glycerate 3-kinase, chloroplast, putative OS=Ricinus communis GN=RCOM_0895280 PE=4 SV=1
Gene Ontology
ID GO:0008887
description d-glycerate 3- chloroplast

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_086122_030 0.0 - - D-glycerate 3-kinase, chloroplast precursor, putative [Ricinus communis]
2 Hb_161981_010 0.0235295206 - - brassinosteroid insensitive 1 -like protein [Gossypium arboreum]
3 Hb_060272_010 0.045894648 - - PREDICTED: gibberellin 20 oxidase 2 [Populus euphratica]
4 Hb_000155_270 0.0626416959 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF098 [Jatropha curcas]
5 Hb_000521_350 0.0834058131 - - unnamed protein product [Vitis vinifera]
6 Hb_001157_130 0.0855511751 - - PREDICTED: transmembrane protein 45B-like [Jatropha curcas]
7 Hb_006268_010 0.0887617946 - - hypothetical protein EUGRSUZ_B00966 [Eucalyptus grandis]
8 Hb_017866_010 0.1106549915 - - kinase family protein [Populus trichocarpa]
9 Hb_007850_040 0.1158713454 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000761_030 0.12102023 transcription factor TF Family: ERF Transcriptional factor TINY, putative [Ricinus communis]
11 Hb_005056_030 0.1215430487 - - DUF26 domain-containing protein 2 precursor, putative [Ricinus communis]
12 Hb_148817_010 0.1234474064 - - PREDICTED: CASP-like protein 1D1 [Jatropha curcas]
13 Hb_132438_010 0.1303457997 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
14 Hb_095532_010 0.1322944096 - - BnaC05g27570D [Brassica napus]
15 Hb_112011_010 0.1325888191 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
16 Hb_000081_030 0.1340576238 - - BnaC09g05810D [Brassica napus]
17 Hb_009543_040 0.1340788517 - - -
18 Hb_000575_010 0.1358994479 - - PREDICTED: uncharacterized protein LOC103454030 [Malus domestica]
19 Hb_000616_060 0.1365536736 - - -
20 Hb_000891_060 0.1393371831 - - hypothetical protein JCGZ_11234 [Jatropha curcas]

Gene co-expression network

sample Hb_086122_030 Hb_086122_030 Hb_161981_010 Hb_161981_010 Hb_086122_030--Hb_161981_010 Hb_060272_010 Hb_060272_010 Hb_086122_030--Hb_060272_010 Hb_000155_270 Hb_000155_270 Hb_086122_030--Hb_000155_270 Hb_000521_350 Hb_000521_350 Hb_086122_030--Hb_000521_350 Hb_001157_130 Hb_001157_130 Hb_086122_030--Hb_001157_130 Hb_006268_010 Hb_006268_010 Hb_086122_030--Hb_006268_010 Hb_161981_010--Hb_060272_010 Hb_161981_010--Hb_000521_350 Hb_161981_010--Hb_000155_270 Hb_161981_010--Hb_006268_010 Hb_148817_010 Hb_148817_010 Hb_161981_010--Hb_148817_010 Hb_060272_010--Hb_001157_130 Hb_060272_010--Hb_000155_270 Hb_017866_010 Hb_017866_010 Hb_060272_010--Hb_017866_010 Hb_132438_010 Hb_132438_010 Hb_060272_010--Hb_132438_010 Hb_000155_270--Hb_006268_010 Hb_000155_270--Hb_001157_130 Hb_007850_040 Hb_007850_040 Hb_000155_270--Hb_007850_040 Hb_000521_350--Hb_148817_010 Hb_000521_350--Hb_060272_010 Hb_000059_110 Hb_000059_110 Hb_000521_350--Hb_000059_110 Hb_001821_030 Hb_001821_030 Hb_000521_350--Hb_001821_030 Hb_009543_040 Hb_009543_040 Hb_001157_130--Hb_009543_040 Hb_001157_130--Hb_132438_010 Hb_000575_010 Hb_000575_010 Hb_001157_130--Hb_000575_010 Hb_000616_060 Hb_000616_060 Hb_001157_130--Hb_000616_060 Hb_006268_010--Hb_007850_040 Hb_005056_030 Hb_005056_030 Hb_006268_010--Hb_005056_030 Hb_002622_020 Hb_002622_020 Hb_006268_010--Hb_002622_020 Hb_006268_010--Hb_060272_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0857566 0 0.173787 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.15743 0

CAGE analysis