Hb_000059_110

Information

Type transcription factor
Description TF Family: MYB
Location Contig59: 101128-102845
Sequence    

Annotation

kegg
ID pop:POPTR_0005s20870g
description POPTRDRAFT_559321; putative MYB transcription factor family protein
nr
ID BAR45579.1
description MYB transcriptional factor [Populus tremula x Populus tremuloides]
swissprot
ID Q9FDW1
description Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1
trembl
ID B9H7M6
description Putative MYB transcription factor family protein OS=Populus trichocarpa GN=POPTR_0005s20870g PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb transcription factor family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000059_110 0.0 transcription factor TF Family: MYB MYB transcriptional factor [Populus tremula x Populus tremuloides]
2 Hb_000521_350 0.1122587677 - - unnamed protein product [Vitis vinifera]
3 Hb_004724_010 0.1122614848 - - -
4 Hb_004241_050 0.1124452477 - - Indole-3-acetic acid-amido synthetase GH3.6, putative [Ricinus communis]
5 Hb_000146_100 0.1132947037 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000658_020 0.1201774958 - - PREDICTED: UDP-glucuronate 4-epimerase 1 [Musa acuminata subsp. malaccensis]
7 Hb_041063_010 0.124065106 - - Disease resistance protein RFL1, putative [Ricinus communis]
8 Hb_112011_010 0.1272094178 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
9 Hb_012879_010 0.1296031792 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001821_030 0.1345335124 - - hypothetical protein JCGZ_13357 [Jatropha curcas]
11 Hb_002054_090 0.1345931169 - - PREDICTED: 36.4 kDa proline-rich protein-like [Gossypium raimondii]
12 Hb_148817_010 0.1392383024 - - PREDICTED: CASP-like protein 1D1 [Jatropha curcas]
13 Hb_017866_010 0.1414413109 - - kinase family protein [Populus trichocarpa]
14 Hb_001369_530 0.1483801273 - - 21 kDa protein precursor, putative [Ricinus communis]
15 Hb_000032_330 0.1517654994 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000098_210 0.1526989447 - - PREDICTED: uncharacterized protein LOC105633345 [Jatropha curcas]
17 Hb_004631_030 0.1546371404 - - PREDICTED: putative clathrin assembly protein At4g40080 [Jatropha curcas]
18 Hb_161981_010 0.1549905792 - - brassinosteroid insensitive 1 -like protein [Gossypium arboreum]
19 Hb_060236_010 0.1557015822 - - hypothetical protein JCGZ_26099 [Jatropha curcas]
20 Hb_000297_220 0.1617851907 - - SAUR family protein [Theobroma cacao]

Gene co-expression network

sample Hb_000059_110 Hb_000059_110 Hb_000521_350 Hb_000521_350 Hb_000059_110--Hb_000521_350 Hb_004724_010 Hb_004724_010 Hb_000059_110--Hb_004724_010 Hb_004241_050 Hb_004241_050 Hb_000059_110--Hb_004241_050 Hb_000146_100 Hb_000146_100 Hb_000059_110--Hb_000146_100 Hb_000658_020 Hb_000658_020 Hb_000059_110--Hb_000658_020 Hb_041063_010 Hb_041063_010 Hb_000059_110--Hb_041063_010 Hb_161981_010 Hb_161981_010 Hb_000521_350--Hb_161981_010 Hb_086122_030 Hb_086122_030 Hb_000521_350--Hb_086122_030 Hb_148817_010 Hb_148817_010 Hb_000521_350--Hb_148817_010 Hb_060272_010 Hb_060272_010 Hb_000521_350--Hb_060272_010 Hb_001821_030 Hb_001821_030 Hb_000521_350--Hb_001821_030 Hb_004724_010--Hb_000658_020 Hb_112011_010 Hb_112011_010 Hb_004724_010--Hb_112011_010 Hb_017866_010 Hb_017866_010 Hb_004724_010--Hb_017866_010 Hb_105446_010 Hb_105446_010 Hb_004724_010--Hb_105446_010 Hb_000751_210 Hb_000751_210 Hb_004724_010--Hb_000751_210 Hb_012879_010 Hb_012879_010 Hb_004724_010--Hb_012879_010 Hb_060236_010 Hb_060236_010 Hb_004241_050--Hb_060236_010 Hb_004241_050--Hb_041063_010 Hb_001115_010 Hb_001115_010 Hb_004241_050--Hb_001115_010 Hb_082733_010 Hb_082733_010 Hb_004241_050--Hb_082733_010 Hb_000563_620 Hb_000563_620 Hb_004241_050--Hb_000563_620 Hb_001645_100 Hb_001645_100 Hb_000146_100--Hb_001645_100 Hb_000146_100--Hb_004724_010 Hb_000146_100--Hb_000658_020 Hb_000501_090 Hb_000501_090 Hb_000146_100--Hb_000501_090 Hb_015026_010 Hb_015026_010 Hb_000146_100--Hb_015026_010 Hb_000658_020--Hb_112011_010 Hb_000658_020--Hb_017866_010 Hb_000658_020--Hb_105446_010 Hb_000658_020--Hb_000751_210 Hb_000658_020--Hb_012879_010 Hb_000032_330 Hb_000032_330 Hb_041063_010--Hb_000032_330 Hb_041063_010--Hb_060236_010 Hb_000098_210 Hb_000098_210 Hb_041063_010--Hb_000098_210 Hb_002054_090 Hb_002054_090 Hb_041063_010--Hb_002054_090 Hb_131417_010 Hb_131417_010 Hb_041063_010--Hb_131417_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.88273 0.059317 7.01496 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.01686 0.05757

CAGE analysis