Hb_148817_010

Information

Type -
Description -
Location Contig148817: 344-838
Sequence    

Annotation

kegg
ID pop:POPTR_0008s20950g
description POPTRDRAFT_820933; hypothetical protein
nr
ID XP_012069400.1
description PREDICTED: CASP-like protein 1D1 [Jatropha curcas]
swissprot
ID B9HMP5
description CASP-like protein 1D1 OS=Populus trichocarpa GN=POPTRDRAFT_820933 PE=3 SV=2
trembl
ID A0A067L687
description CASP-like protein OS=Jatropha curcas GN=JCGZ_02018 PE=3 SV=1
Gene Ontology
ID GO:0005886
description casp-like protein 1d1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_148817_010 0.0 - - PREDICTED: CASP-like protein 1D1 [Jatropha curcas]
2 Hb_095532_010 0.0824428043 - - BnaC05g27570D [Brassica napus]
3 Hb_000521_350 0.0865336845 - - unnamed protein product [Vitis vinifera]
4 Hb_000081_030 0.0914805495 - - BnaC09g05810D [Brassica napus]
5 Hb_004875_040 0.0934316582 - - PREDICTED: uncharacterized protein LOC105645797 [Jatropha curcas]
6 Hb_000032_330 0.0965023474 - - conserved hypothetical protein [Ricinus communis]
7 Hb_006314_020 0.0966293999 - - PREDICTED: GABA transporter 1-like [Jatropha curcas]
8 Hb_001856_150 0.0988526051 - - -
9 Hb_161981_010 0.1058607784 - - brassinosteroid insensitive 1 -like protein [Gossypium arboreum]
10 Hb_020805_110 0.1127202187 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
11 Hb_000098_210 0.112971254 - - PREDICTED: uncharacterized protein LOC105633345 [Jatropha curcas]
12 Hb_001821_030 0.1167153559 - - hypothetical protein JCGZ_13357 [Jatropha curcas]
13 Hb_086122_030 0.1234474064 - - D-glycerate 3-kinase, chloroplast precursor, putative [Ricinus communis]
14 Hb_014115_010 0.124191638 - - UDP-glucosyltransferase, putative [Ricinus communis]
15 Hb_000230_160 0.1303068307 - - PREDICTED: uncharacterized protein LOC105631858 isoform X1 [Jatropha curcas]
16 Hb_000676_380 0.1331245617 - - cytochrome P450 family protein [Populus trichocarpa]
17 Hb_003469_030 0.133825355 - - hypothetical protein JCGZ_01307 [Jatropha curcas]
18 Hb_000306_050 0.1340462461 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
19 Hb_000286_030 0.1352093044 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
20 Hb_003371_040 0.1383298556 - - PREDICTED: uncharacterized protein LOC105650327 [Jatropha curcas]

Gene co-expression network

sample Hb_148817_010 Hb_148817_010 Hb_095532_010 Hb_095532_010 Hb_148817_010--Hb_095532_010 Hb_000521_350 Hb_000521_350 Hb_148817_010--Hb_000521_350 Hb_000081_030 Hb_000081_030 Hb_148817_010--Hb_000081_030 Hb_004875_040 Hb_004875_040 Hb_148817_010--Hb_004875_040 Hb_000032_330 Hb_000032_330 Hb_148817_010--Hb_000032_330 Hb_006314_020 Hb_006314_020 Hb_148817_010--Hb_006314_020 Hb_003469_030 Hb_003469_030 Hb_095532_010--Hb_003469_030 Hb_095532_010--Hb_000032_330 Hb_161981_010 Hb_161981_010 Hb_095532_010--Hb_161981_010 Hb_095532_010--Hb_000521_350 Hb_000670_080 Hb_000670_080 Hb_095532_010--Hb_000670_080 Hb_000521_350--Hb_161981_010 Hb_086122_030 Hb_086122_030 Hb_000521_350--Hb_086122_030 Hb_060272_010 Hb_060272_010 Hb_000521_350--Hb_060272_010 Hb_000059_110 Hb_000059_110 Hb_000521_350--Hb_000059_110 Hb_001821_030 Hb_001821_030 Hb_000521_350--Hb_001821_030 Hb_000230_160 Hb_000230_160 Hb_000081_030--Hb_000230_160 Hb_000286_030 Hb_000286_030 Hb_000081_030--Hb_000286_030 Hb_000761_030 Hb_000761_030 Hb_000081_030--Hb_000761_030 Hb_001856_150 Hb_001856_150 Hb_000081_030--Hb_001856_150 Hb_000081_030--Hb_006314_020 Hb_020805_110 Hb_020805_110 Hb_004875_040--Hb_020805_110 Hb_004875_040--Hb_001856_150 Hb_000098_210 Hb_000098_210 Hb_004875_040--Hb_000098_210 Hb_000676_380 Hb_000676_380 Hb_004875_040--Hb_000676_380 Hb_004875_040--Hb_006314_020 Hb_000032_330--Hb_000098_210 Hb_041063_010 Hb_041063_010 Hb_000032_330--Hb_041063_010 Hb_000032_330--Hb_004875_040 Hb_000032_330--Hb_020805_110 Hb_006314_020--Hb_001856_150 Hb_003371_040 Hb_003371_040 Hb_006314_020--Hb_003371_040 Hb_006314_020--Hb_000230_160 Hb_003171_070 Hb_003171_070 Hb_006314_020--Hb_003171_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 53.8953 2.30993 211.047 0.269607 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 181.219 2.44248

CAGE analysis