Hb_000286_030

Information

Type -
Description -
Location Contig286: 10153-18175
Sequence    

Annotation

kegg
ID tcc:TCM_042545
description LRR receptor-like serine/threonine-protein kinase, putative
nr
ID XP_012071403.1
description PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
swissprot
ID C0LGP4
description Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=2 SV=1
trembl
ID A0A067L2Y3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05017 PE=4 SV=1
Gene Ontology
ID GO:0016020
description lrr receptor-like serine threonine-protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29871: 16863-17161
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000286_030 0.0 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
2 Hb_000081_030 0.0801275802 - - BnaC09g05810D [Brassica napus]
3 Hb_000230_160 0.0840332411 - - PREDICTED: uncharacterized protein LOC105631858 isoform X1 [Jatropha curcas]
4 Hb_000172_740 0.0959107114 - - HXXXD-type acyl-transferase family protein, putative [Theobroma cacao]
5 Hb_001856_150 0.1069108048 - - -
6 Hb_006314_020 0.1073665577 - - PREDICTED: GABA transporter 1-like [Jatropha curcas]
7 Hb_001863_080 0.1075767203 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Jatropha curcas]
8 Hb_003058_180 0.1114995589 transcription factor TF Family: HSF hypothetical protein POPTR_0001s28040g [Populus trichocarpa]
9 Hb_000761_030 0.1213825451 transcription factor TF Family: ERF Transcriptional factor TINY, putative [Ricinus communis]
10 Hb_008001_020 0.1246370829 transcription factor TF Family: GRAS PREDICTED: protein SHORT-ROOT-like [Populus euphratica]
11 Hb_028008_030 0.127767384 - - probable xyloglucan endotransglucosylase/hydrolase protein 23 precursor [Malus domestica]
12 Hb_000487_140 0.1313522488 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
13 Hb_148817_010 0.1352093044 - - PREDICTED: CASP-like protein 1D1 [Jatropha curcas]
14 Hb_188923_010 0.136649529 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
15 Hb_003805_080 0.1375287533 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
16 Hb_003435_070 0.1377249201 - - PREDICTED: probable pectate lyase 12 isoform X3 [Jatropha curcas]
17 Hb_006120_010 0.1477915029 - - invertase inhibitor [Manihot esculenta]
18 Hb_003967_010 0.1478361581 - - cytochrome P450, putative [Ricinus communis]
19 Hb_001821_030 0.1488917232 - - hypothetical protein JCGZ_13357 [Jatropha curcas]
20 Hb_003371_040 0.1511440243 - - PREDICTED: uncharacterized protein LOC105650327 [Jatropha curcas]

Gene co-expression network

sample Hb_000286_030 Hb_000286_030 Hb_000081_030 Hb_000081_030 Hb_000286_030--Hb_000081_030 Hb_000230_160 Hb_000230_160 Hb_000286_030--Hb_000230_160 Hb_000172_740 Hb_000172_740 Hb_000286_030--Hb_000172_740 Hb_001856_150 Hb_001856_150 Hb_000286_030--Hb_001856_150 Hb_006314_020 Hb_006314_020 Hb_000286_030--Hb_006314_020 Hb_001863_080 Hb_001863_080 Hb_000286_030--Hb_001863_080 Hb_000081_030--Hb_000230_160 Hb_000761_030 Hb_000761_030 Hb_000081_030--Hb_000761_030 Hb_148817_010 Hb_148817_010 Hb_000081_030--Hb_148817_010 Hb_000081_030--Hb_001856_150 Hb_000081_030--Hb_006314_020 Hb_003058_180 Hb_003058_180 Hb_000230_160--Hb_003058_180 Hb_000230_160--Hb_001856_150 Hb_028008_030 Hb_028008_030 Hb_000230_160--Hb_028008_030 Hb_000230_160--Hb_006314_020 Hb_000172_740--Hb_001863_080 Hb_150084_010 Hb_150084_010 Hb_000172_740--Hb_150084_010 Hb_188923_010 Hb_188923_010 Hb_000172_740--Hb_188923_010 Hb_003805_080 Hb_003805_080 Hb_000172_740--Hb_003805_080 Hb_000172_740--Hb_000230_160 Hb_001856_150--Hb_006314_020 Hb_003435_070 Hb_003435_070 Hb_001856_150--Hb_003435_070 Hb_003171_070 Hb_003171_070 Hb_001856_150--Hb_003171_070 Hb_004875_040 Hb_004875_040 Hb_001856_150--Hb_004875_040 Hb_003371_040 Hb_003371_040 Hb_006314_020--Hb_003371_040 Hb_006314_020--Hb_003171_070 Hb_006314_020--Hb_148817_010 Hb_001863_080--Hb_188923_010 Hb_001863_080--Hb_003058_180 Hb_001863_080--Hb_150084_010 Hb_000487_140 Hb_000487_140 Hb_001863_080--Hb_000487_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.55365 0.0520865 3.60899 0 0.00482864
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.20329 0.402167

CAGE analysis