Hb_006314_020

Information

Type -
Description -
Location Contig6314: 30981-42297
Sequence    

Annotation

kegg
ID pop:POPTR_0008s02690g
description POPTRDRAFT_563642; hypothetical protein
nr
ID XP_012090037.1
description PREDICTED: GABA transporter 1-like [Jatropha curcas]
swissprot
ID F4HW02
description GABA transporter 1 OS=Arabidopsis thaliana GN=GAT1 PE=1 SV=1
trembl
ID B9HL46
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s02690g PE=4 SV=1
Gene Ontology
ID GO:0016021
description gaba transporter 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51844: 31656-32601
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006314_020 0.0 - - PREDICTED: GABA transporter 1-like [Jatropha curcas]
2 Hb_001856_150 0.0531484879 - - -
3 Hb_003371_040 0.0667466325 - - PREDICTED: uncharacterized protein LOC105650327 [Jatropha curcas]
4 Hb_000230_160 0.0917728015 - - PREDICTED: uncharacterized protein LOC105631858 isoform X1 [Jatropha curcas]
5 Hb_003171_070 0.0931240046 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Citrus sinensis]
6 Hb_148817_010 0.0966293999 - - PREDICTED: CASP-like protein 1D1 [Jatropha curcas]
7 Hb_000081_030 0.0978210318 - - BnaC09g05810D [Brassica napus]
8 Hb_001775_130 0.1053528174 - - Prephenate dehydratase [Hevea brasiliensis]
9 Hb_002876_190 0.1057236398 transcription factor TF Family: GRAS hypothetical protein PRUPE_ppa017519mg [Prunus persica]
10 Hb_004875_040 0.1071741721 - - PREDICTED: uncharacterized protein LOC105645797 [Jatropha curcas]
11 Hb_000286_030 0.1073665577 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
12 Hb_001821_030 0.112448433 - - hypothetical protein JCGZ_13357 [Jatropha curcas]
13 Hb_020805_110 0.1173351793 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
14 Hb_005333_120 0.1191153564 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2 [Jatropha curcas]
15 Hb_003435_070 0.123944066 - - PREDICTED: probable pectate lyase 12 isoform X3 [Jatropha curcas]
16 Hb_000676_380 0.1271803738 - - cytochrome P450 family protein [Populus trichocarpa]
17 Hb_000306_050 0.1283733049 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
18 Hb_009711_040 0.1285325735 - - PREDICTED: uncharacterized protein LOC105647789 [Jatropha curcas]
19 Hb_000098_210 0.1309973715 - - PREDICTED: uncharacterized protein LOC105633345 [Jatropha curcas]
20 Hb_000429_030 0.131842996 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_006314_020 Hb_006314_020 Hb_001856_150 Hb_001856_150 Hb_006314_020--Hb_001856_150 Hb_003371_040 Hb_003371_040 Hb_006314_020--Hb_003371_040 Hb_000230_160 Hb_000230_160 Hb_006314_020--Hb_000230_160 Hb_003171_070 Hb_003171_070 Hb_006314_020--Hb_003171_070 Hb_148817_010 Hb_148817_010 Hb_006314_020--Hb_148817_010 Hb_000081_030 Hb_000081_030 Hb_006314_020--Hb_000081_030 Hb_001856_150--Hb_000230_160 Hb_003435_070 Hb_003435_070 Hb_001856_150--Hb_003435_070 Hb_001856_150--Hb_000081_030 Hb_001856_150--Hb_003171_070 Hb_004875_040 Hb_004875_040 Hb_001856_150--Hb_004875_040 Hb_002876_190 Hb_002876_190 Hb_003371_040--Hb_002876_190 Hb_001775_130 Hb_001775_130 Hb_003371_040--Hb_001775_130 Hb_000429_030 Hb_000429_030 Hb_003371_040--Hb_000429_030 Hb_003371_040--Hb_003171_070 Hb_003371_040--Hb_001856_150 Hb_003058_180 Hb_003058_180 Hb_000230_160--Hb_003058_180 Hb_000230_160--Hb_000081_030 Hb_000286_030 Hb_000286_030 Hb_000230_160--Hb_000286_030 Hb_028008_030 Hb_028008_030 Hb_000230_160--Hb_028008_030 Hb_000676_380 Hb_000676_380 Hb_003171_070--Hb_000676_380 Hb_161346_010 Hb_161346_010 Hb_003171_070--Hb_161346_010 Hb_003171_070--Hb_000429_030 Hb_095532_010 Hb_095532_010 Hb_148817_010--Hb_095532_010 Hb_000521_350 Hb_000521_350 Hb_148817_010--Hb_000521_350 Hb_148817_010--Hb_000081_030 Hb_148817_010--Hb_004875_040 Hb_000032_330 Hb_000032_330 Hb_148817_010--Hb_000032_330 Hb_000081_030--Hb_000286_030 Hb_000761_030 Hb_000761_030 Hb_000081_030--Hb_000761_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.74281 0.144292 2.84928 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.52625 0.152841

CAGE analysis