Hb_001775_130

Information

Type -
Description -
Location Contig1775: 127263-128552
Sequence    

Annotation

kegg
ID pop:POPTR_0009s15100g
description POPTRDRAFT_721464; prephenate dehydratase family protein
nr
ID BAH10647.1
description Prephenate dehydratase [Hevea brasiliensis]
swissprot
ID Q9SGD6
description Arogenate dehydratase/prephenate dehydratase 6, chloroplastic OS=Arabidopsis thaliana GN=ADT6 PE=1 SV=1
trembl
ID B7X944
description Prephenate dehydratase OS=Hevea brasiliensis GN=pd2 PE=2 SV=1
Gene Ontology
ID GO:0004664
description arogenate dehydratase prephenate dehydratase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001775_130 0.0 - - Prephenate dehydratase [Hevea brasiliensis]
2 Hb_002876_190 0.0368000012 transcription factor TF Family: GRAS hypothetical protein PRUPE_ppa017519mg [Prunus persica]
3 Hb_039096_010 0.0734428335 - - unknown [Populus trichocarpa]
4 Hb_003371_040 0.0888668364 - - PREDICTED: uncharacterized protein LOC105650327 [Jatropha curcas]
5 Hb_003171_070 0.1015752548 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Citrus sinensis]
6 Hb_006314_020 0.1053528174 - - PREDICTED: GABA transporter 1-like [Jatropha curcas]
7 Hb_001856_150 0.1055882818 - - -
8 Hb_000106_060 0.1077389409 - - PREDICTED: uncharacterized protein LOC105636580 [Jatropha curcas]
9 Hb_170861_010 0.1131926559 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
10 Hb_003435_070 0.1151785213 - - PREDICTED: probable pectate lyase 12 isoform X3 [Jatropha curcas]
11 Hb_113945_010 0.1218297518 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
12 Hb_004875_040 0.1264163234 - - PREDICTED: uncharacterized protein LOC105645797 [Jatropha curcas]
13 Hb_000676_380 0.1304003878 - - cytochrome P450 family protein [Populus trichocarpa]
14 Hb_000098_210 0.1325377597 - - PREDICTED: uncharacterized protein LOC105633345 [Jatropha curcas]
15 Hb_005333_120 0.1379497856 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2 [Jatropha curcas]
16 Hb_000429_030 0.1396141396 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
17 Hb_000934_180 0.1408329803 - - hypothetical protein JCGZ_25237 [Jatropha curcas]
18 Hb_182831_020 0.1424409241 - - multidrug resistance pump, putative [Ricinus communis]
19 Hb_011139_010 0.1431325818 - - o-methyltransferase, putative [Ricinus communis]
20 Hb_148817_010 0.151566308 - - PREDICTED: CASP-like protein 1D1 [Jatropha curcas]

Gene co-expression network

sample Hb_001775_130 Hb_001775_130 Hb_002876_190 Hb_002876_190 Hb_001775_130--Hb_002876_190 Hb_039096_010 Hb_039096_010 Hb_001775_130--Hb_039096_010 Hb_003371_040 Hb_003371_040 Hb_001775_130--Hb_003371_040 Hb_003171_070 Hb_003171_070 Hb_001775_130--Hb_003171_070 Hb_006314_020 Hb_006314_020 Hb_001775_130--Hb_006314_020 Hb_001856_150 Hb_001856_150 Hb_001775_130--Hb_001856_150 Hb_002876_190--Hb_039096_010 Hb_002876_190--Hb_003371_040 Hb_113945_010 Hb_113945_010 Hb_002876_190--Hb_113945_010 Hb_000106_060 Hb_000106_060 Hb_002876_190--Hb_000106_060 Hb_002876_190--Hb_006314_020 Hb_039096_010--Hb_113945_010 Hb_039096_010--Hb_000106_060 Hb_000934_180 Hb_000934_180 Hb_039096_010--Hb_000934_180 Hb_170861_010 Hb_170861_010 Hb_039096_010--Hb_170861_010 Hb_003371_040--Hb_006314_020 Hb_000429_030 Hb_000429_030 Hb_003371_040--Hb_000429_030 Hb_003371_040--Hb_003171_070 Hb_003371_040--Hb_001856_150 Hb_000676_380 Hb_000676_380 Hb_003171_070--Hb_000676_380 Hb_003171_070--Hb_006314_020 Hb_003171_070--Hb_001856_150 Hb_161346_010 Hb_161346_010 Hb_003171_070--Hb_161346_010 Hb_003171_070--Hb_000429_030 Hb_006314_020--Hb_001856_150 Hb_000230_160 Hb_000230_160 Hb_006314_020--Hb_000230_160 Hb_148817_010 Hb_148817_010 Hb_006314_020--Hb_148817_010 Hb_000081_030 Hb_000081_030 Hb_006314_020--Hb_000081_030 Hb_001856_150--Hb_000230_160 Hb_003435_070 Hb_003435_070 Hb_001856_150--Hb_003435_070 Hb_001856_150--Hb_000081_030 Hb_004875_040 Hb_004875_040 Hb_001856_150--Hb_004875_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0163152 7.34991 1.37888 54.8663 0.0163535 0.0168326
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0546742 43.0833 5.7194

CAGE analysis