Hb_170861_010

Information

Type -
Description -
Location Contig170861: 24972-26197
Sequence    

Annotation

kegg
ID rcu:RCOM_0091750
description Receptor protein kinase CLAVATA1 precursor, putative (EC:1.3.1.74)
nr
ID XP_002526749.1
description Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
swissprot
ID P55202
description Atrial natriuretic peptide receptor 2 OS=Anguilla japonica GN=npr2 PE=2 SV=1
trembl
ID B9SL80
description Receptor protein kinase CLAVATA1, putative OS=Ricinus communis GN=RCOM_0091750 PE=4 SV=1
Gene Ontology
ID GO:0016020
description probably inactive leucine-rich repeat receptor-like protein kinase at5g06940

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15955: 24950-26150
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_170861_010 0.0 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
2 Hb_000106_060 0.0557700526 - - PREDICTED: uncharacterized protein LOC105636580 [Jatropha curcas]
3 Hb_113945_010 0.0642888033 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
4 Hb_000934_180 0.0881157675 - - hypothetical protein JCGZ_25237 [Jatropha curcas]
5 Hb_039096_010 0.0959132781 - - unknown [Populus trichocarpa]
6 Hb_120357_010 0.1071316286 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
7 Hb_002876_190 0.1083899616 transcription factor TF Family: GRAS hypothetical protein PRUPE_ppa017519mg [Prunus persica]
8 Hb_007161_020 0.1086730759 - - PREDICTED: serine/threonine-protein kinase BRI1-like 2 [Jatropha curcas]
9 Hb_000429_030 0.1127916803 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
10 Hb_001775_130 0.1131926559 - - Prephenate dehydratase [Hevea brasiliensis]
11 Hb_003371_040 0.1153792292 - - PREDICTED: uncharacterized protein LOC105650327 [Jatropha curcas]
12 Hb_003171_070 0.1335195873 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Citrus sinensis]
13 Hb_004397_010 0.1368750813 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
14 Hb_080068_010 0.1417157317 - - PREDICTED: basic 7S globulin-like [Jatropha curcas]
15 Hb_000011_320 0.1479538357 - - PREDICTED: uncharacterized protein LOC105631328 [Jatropha curcas]
16 Hb_081191_010 0.1482203173 - - PREDICTED: pathogenesis-related protein PR-1-like [Jatropha curcas]
17 Hb_009615_030 0.1507402537 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_003304_090 0.1527814991 - - PREDICTED: uncharacterized protein LOC105633680 [Jatropha curcas]
19 Hb_008727_040 0.1570901562 - - conserved hypothetical protein [Ricinus communis]
20 Hb_182831_020 0.1584853097 - - multidrug resistance pump, putative [Ricinus communis]

Gene co-expression network

sample Hb_170861_010 Hb_170861_010 Hb_000106_060 Hb_000106_060 Hb_170861_010--Hb_000106_060 Hb_113945_010 Hb_113945_010 Hb_170861_010--Hb_113945_010 Hb_000934_180 Hb_000934_180 Hb_170861_010--Hb_000934_180 Hb_039096_010 Hb_039096_010 Hb_170861_010--Hb_039096_010 Hb_120357_010 Hb_120357_010 Hb_170861_010--Hb_120357_010 Hb_002876_190 Hb_002876_190 Hb_170861_010--Hb_002876_190 Hb_000106_060--Hb_113945_010 Hb_000106_060--Hb_039096_010 Hb_000106_060--Hb_000934_180 Hb_000106_060--Hb_002876_190 Hb_001775_130 Hb_001775_130 Hb_000106_060--Hb_001775_130 Hb_113945_010--Hb_039096_010 Hb_113945_010--Hb_000934_180 Hb_007161_020 Hb_007161_020 Hb_113945_010--Hb_007161_020 Hb_113945_010--Hb_002876_190 Hb_000934_180--Hb_039096_010 Hb_000934_180--Hb_120357_010 Hb_000934_180--Hb_002876_190 Hb_039096_010--Hb_002876_190 Hb_039096_010--Hb_001775_130 Hb_000561_040 Hb_000561_040 Hb_120357_010--Hb_000561_040 Hb_049438_020 Hb_049438_020 Hb_120357_010--Hb_049438_020 Hb_004397_010 Hb_004397_010 Hb_120357_010--Hb_004397_010 Hb_120357_010--Hb_113945_010 Hb_002876_190--Hb_001775_130 Hb_003371_040 Hb_003371_040 Hb_002876_190--Hb_003371_040 Hb_006314_020 Hb_006314_020 Hb_002876_190--Hb_006314_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.618506 0.51756 8.22328 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.29969 0.840982

CAGE analysis