Hb_049438_020

Information

Type -
Description -
Location Contig49438: 22280-25586
Sequence    

Annotation

kegg
ID pop:POPTR_0001s02870g
description Peroxidase 20 precursor family protein
nr
ID XP_012086172.1
description PREDICTED: peroxidase 20 [Jatropha curcas]
swissprot
ID Q9SLH7
description Peroxidase 20 OS=Arabidopsis thaliana GN=PER20 PE=2 SV=1
trembl
ID A0A067LD33
description Peroxidase OS=Jatropha curcas GN=JCGZ_17470 PE=3 SV=1
Gene Ontology
ID GO:0005576
description peroxidase 20

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45422: 22341-24241
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_049438_020 0.0 - - PREDICTED: peroxidase 20 [Jatropha curcas]
2 Hb_120357_010 0.1020468788 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
3 Hb_000561_040 0.1049615546 - - PREDICTED: dirigent protein 19-like [Jatropha curcas]
4 Hb_000389_100 0.108508379 - - phenylalanine ammonia-lyase 1 [Manihot esculenta]
5 Hb_001856_260 0.1113988938 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
6 Hb_162815_010 0.1219732062 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
7 Hb_000685_100 0.1231581075 - - hypothetical protein POPTR_0001s10630g [Populus trichocarpa]
8 Hb_000934_180 0.1358575571 - - hypothetical protein JCGZ_25237 [Jatropha curcas]
9 Hb_000659_050 0.1374037375 - - PREDICTED: basic blue protein-like [Jatropha curcas]
10 Hb_000327_100 0.1427478325 - - hypothetical protein JCGZ_06658 [Jatropha curcas]
11 Hb_008304_050 0.1445383727 - - PREDICTED: trans-cinnamate 4-monooxygenase [Jatropha curcas]
12 Hb_002869_090 0.1461279372 - - PREDICTED: dirigent protein 22-like [Jatropha curcas]
13 Hb_001675_020 0.1502361529 - - -
14 Hb_146036_010 0.1524684781 - - hypothetical protein B456_005G052500 [Gossypium raimondii]
15 Hb_004397_010 0.1557084528 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
16 Hb_007237_060 0.1561801691 - - -
17 Hb_000015_190 0.1575270223 - - PREDICTED: uncharacterized protein LOC105647810 [Jatropha curcas]
18 Hb_000237_060 0.1576209056 - - hypothetical protein PRUPE_ppa022052mg, partial [Prunus persica]
19 Hb_000011_320 0.1596365327 - - PREDICTED: uncharacterized protein LOC105631328 [Jatropha curcas]
20 Hb_170861_010 0.1599984233 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_049438_020 Hb_049438_020 Hb_120357_010 Hb_120357_010 Hb_049438_020--Hb_120357_010 Hb_000561_040 Hb_000561_040 Hb_049438_020--Hb_000561_040 Hb_000389_100 Hb_000389_100 Hb_049438_020--Hb_000389_100 Hb_001856_260 Hb_001856_260 Hb_049438_020--Hb_001856_260 Hb_162815_010 Hb_162815_010 Hb_049438_020--Hb_162815_010 Hb_000685_100 Hb_000685_100 Hb_049438_020--Hb_000685_100 Hb_120357_010--Hb_000561_040 Hb_170861_010 Hb_170861_010 Hb_120357_010--Hb_170861_010 Hb_004397_010 Hb_004397_010 Hb_120357_010--Hb_004397_010 Hb_113945_010 Hb_113945_010 Hb_120357_010--Hb_113945_010 Hb_000934_180 Hb_000934_180 Hb_120357_010--Hb_000934_180 Hb_000561_040--Hb_000389_100 Hb_002869_090 Hb_002869_090 Hb_000561_040--Hb_002869_090 Hb_000659_050 Hb_000659_050 Hb_000561_040--Hb_000659_050 Hb_027400_020 Hb_027400_020 Hb_000561_040--Hb_027400_020 Hb_008304_050 Hb_008304_050 Hb_000389_100--Hb_008304_050 Hb_002566_020 Hb_002566_020 Hb_000389_100--Hb_002566_020 Hb_009456_010 Hb_009456_010 Hb_000389_100--Hb_009456_010 Hb_031224_010 Hb_031224_010 Hb_000389_100--Hb_031224_010 Hb_002783_180 Hb_002783_180 Hb_000389_100--Hb_002783_180 Hb_000237_060 Hb_000237_060 Hb_001856_260--Hb_000237_060 Hb_000086_530 Hb_000086_530 Hb_001856_260--Hb_000086_530 Hb_007237_060 Hb_007237_060 Hb_001856_260--Hb_007237_060 Hb_000327_100 Hb_000327_100 Hb_001856_260--Hb_000327_100 Hb_000163_170 Hb_000163_170 Hb_001856_260--Hb_000163_170 Hb_001863_520 Hb_001863_520 Hb_162815_010--Hb_001863_520 Hb_030088_010 Hb_030088_010 Hb_162815_010--Hb_030088_010 Hb_162815_010--Hb_004397_010 Hb_162815_010--Hb_001856_260 Hb_162815_010--Hb_120357_010 Hb_000685_100--Hb_007237_060 Hb_005116_040 Hb_005116_040 Hb_000685_100--Hb_005116_040 Hb_000034_060 Hb_000034_060 Hb_000685_100--Hb_000034_060 Hb_000685_100--Hb_001856_260 Hb_000685_100--Hb_000237_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0641159 0.60932 6.32587 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.27408 1.24644

CAGE analysis