Hb_162815_010

Information

Type -
Description -
Location Contig162815: 23-1030
Sequence    

Annotation

kegg
ID rcu:RCOM_0091750
description Receptor protein kinase CLAVATA1 precursor, putative (EC:1.3.1.74)
nr
ID XP_002526749.1
description Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
swissprot
ID Q9FL51
description Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 OS=Arabidopsis thaliana GN=At5g06940 PE=3 SV=1
trembl
ID B9SL80
description Receptor protein kinase CLAVATA1, putative OS=Ricinus communis GN=RCOM_0091750 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probably inactive leucine-rich repeat receptor-like protein kinase at5g06940

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_162815_010 0.0 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
2 Hb_001863_520 0.0949240774 - - conserved hypothetical protein [Ricinus communis]
3 Hb_030088_010 0.1213631397 - - basic blue copper family protein [Populus trichocarpa]
4 Hb_049438_020 0.1219732062 - - PREDICTED: peroxidase 20 [Jatropha curcas]
5 Hb_004397_010 0.1219903985 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
6 Hb_001856_260 0.1299372307 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
7 Hb_120357_010 0.1446239623 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
8 Hb_000237_060 0.1467776733 - - hypothetical protein PRUPE_ppa022052mg, partial [Prunus persica]
9 Hb_002020_010 0.1624290664 - - kinase-like protein [Corylus avellana]
10 Hb_001091_040 0.1627785949 - - hypothetical protein JCGZ_01204 [Jatropha curcas]
11 Hb_059226_020 0.1632661755 - - hypothetical protein B456_008G287700 [Gossypium raimondii]
12 Hb_110631_010 0.1642320578 - - hypothetical protein JCGZ_04359 [Jatropha curcas]
13 Hb_006275_040 0.1648150465 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
14 Hb_000327_100 0.1703239007 - - hypothetical protein JCGZ_06658 [Jatropha curcas]
15 Hb_003057_040 0.1715412471 - - PREDICTED: salt stress-induced hydrophobic peptide ESI3 [Vitis vinifera]
16 Hb_000086_530 0.1732227765 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001091_010 0.175174284 - - PREDICTED: putative disease resistance protein RGA4 isoform X2 [Malus domestica]
18 Hb_005144_140 0.1764197946 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000561_040 0.1774407481 - - PREDICTED: dirigent protein 19-like [Jatropha curcas]
20 Hb_000071_040 0.1783268839 - - hypothetical protein POPTR_0001s24580g [Populus trichocarpa]

Gene co-expression network

sample Hb_162815_010 Hb_162815_010 Hb_001863_520 Hb_001863_520 Hb_162815_010--Hb_001863_520 Hb_030088_010 Hb_030088_010 Hb_162815_010--Hb_030088_010 Hb_049438_020 Hb_049438_020 Hb_162815_010--Hb_049438_020 Hb_004397_010 Hb_004397_010 Hb_162815_010--Hb_004397_010 Hb_001856_260 Hb_001856_260 Hb_162815_010--Hb_001856_260 Hb_120357_010 Hb_120357_010 Hb_162815_010--Hb_120357_010 Hb_110631_010 Hb_110631_010 Hb_001863_520--Hb_110631_010 Hb_001300_060 Hb_001300_060 Hb_001863_520--Hb_001300_060 Hb_010308_010 Hb_010308_010 Hb_001863_520--Hb_010308_010 Hb_000496_080 Hb_000496_080 Hb_001863_520--Hb_000496_080 Hb_004330_050 Hb_004330_050 Hb_001863_520--Hb_004330_050 Hb_005144_140 Hb_005144_140 Hb_030088_010--Hb_005144_140 Hb_000917_070 Hb_000917_070 Hb_030088_010--Hb_000917_070 Hb_030088_010--Hb_004397_010 Hb_001091_040 Hb_001091_040 Hb_030088_010--Hb_001091_040 Hb_039946_040 Hb_039946_040 Hb_030088_010--Hb_039946_040 Hb_049438_020--Hb_120357_010 Hb_000561_040 Hb_000561_040 Hb_049438_020--Hb_000561_040 Hb_000389_100 Hb_000389_100 Hb_049438_020--Hb_000389_100 Hb_049438_020--Hb_001856_260 Hb_000685_100 Hb_000685_100 Hb_049438_020--Hb_000685_100 Hb_059226_020 Hb_059226_020 Hb_004397_010--Hb_059226_020 Hb_004397_010--Hb_120357_010 Hb_006351_040 Hb_006351_040 Hb_004397_010--Hb_006351_040 Hb_066207_020 Hb_066207_020 Hb_004397_010--Hb_066207_020 Hb_000237_060 Hb_000237_060 Hb_001856_260--Hb_000237_060 Hb_000086_530 Hb_000086_530 Hb_001856_260--Hb_000086_530 Hb_007237_060 Hb_007237_060 Hb_001856_260--Hb_007237_060 Hb_000327_100 Hb_000327_100 Hb_001856_260--Hb_000327_100 Hb_000163_170 Hb_000163_170 Hb_001856_260--Hb_000163_170 Hb_120357_010--Hb_000561_040 Hb_170861_010 Hb_170861_010 Hb_120357_010--Hb_170861_010 Hb_113945_010 Hb_113945_010 Hb_120357_010--Hb_113945_010 Hb_000934_180 Hb_000934_180 Hb_120357_010--Hb_000934_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.225787 2.58414 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.775542 0.19436

CAGE analysis