Hb_005144_140

Information

Type -
Description -
Location Contig5144: 108216-109107
Sequence    

Annotation

kegg
ID rcu:RCOM_0474380
description hypothetical protein
nr
ID XP_002523712.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID F4I9E1
description Protein NUCLEAR FUSION DEFECTIVE 4 OS=Arabidopsis thaliana GN=NFD4 PE=3 SV=1
trembl
ID B9SCJ3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0474380 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005144_140 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000917_070 0.0170879385 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004102_150 0.0627651636 - - Late embryogenesis abundant protein D-7, putative [Ricinus communis]
4 Hb_006275_040 0.0708703284 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
5 Hb_000935_060 0.0733289169 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 8-like [Jatropha curcas]
6 Hb_073870_010 0.094786445 - - hypothetical protein RCOM_0725510 [Ricinus communis]
7 Hb_005348_020 0.097553813 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001404_060 0.1113758032 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
9 Hb_000926_240 0.119434191 - - hypothetical protein PRUPE_ppb018041mg [Prunus persica]
10 Hb_030088_010 0.1199700859 - - basic blue copper family protein [Populus trichocarpa]
11 Hb_000740_140 0.1210168228 transcription factor TF Family: OFP PREDICTED: probable transcription repressor OFP9 [Jatropha curcas]
12 Hb_003057_040 0.1239632444 - - PREDICTED: salt stress-induced hydrophobic peptide ESI3 [Vitis vinifera]
13 Hb_001300_060 0.1252954129 - - PREDICTED: monothiol glutaredoxin-S6-like [Jatropha curcas]
14 Hb_007138_010 0.13094266 - - PREDICTED: putative laccase-9 [Jatropha curcas]
15 Hb_006103_050 0.1357226911 - - -
16 Hb_004330_050 0.1378827291 - - conserved hypothetical protein [Ricinus communis]
17 Hb_010308_010 0.1397358626 - - hypothetical protein JCGZ_22818 [Jatropha curcas]
18 Hb_000496_080 0.1408951326 - - Proteinase inhibitor, putative [Ricinus communis]
19 Hb_039946_040 0.1420625999 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
20 Hb_100953_010 0.1438339523 - - hypothetical protein JCGZ_10310 [Jatropha curcas]

Gene co-expression network

sample Hb_005144_140 Hb_005144_140 Hb_000917_070 Hb_000917_070 Hb_005144_140--Hb_000917_070 Hb_004102_150 Hb_004102_150 Hb_005144_140--Hb_004102_150 Hb_006275_040 Hb_006275_040 Hb_005144_140--Hb_006275_040 Hb_000935_060 Hb_000935_060 Hb_005144_140--Hb_000935_060 Hb_073870_010 Hb_073870_010 Hb_005144_140--Hb_073870_010 Hb_005348_020 Hb_005348_020 Hb_005144_140--Hb_005348_020 Hb_000917_070--Hb_004102_150 Hb_000917_070--Hb_000935_060 Hb_000917_070--Hb_005348_020 Hb_000917_070--Hb_006275_040 Hb_000740_140 Hb_000740_140 Hb_000917_070--Hb_000740_140 Hb_004102_150--Hb_000935_060 Hb_000926_240 Hb_000926_240 Hb_004102_150--Hb_000926_240 Hb_010068_010 Hb_010068_010 Hb_004102_150--Hb_010068_010 Hb_004102_150--Hb_005348_020 Hb_001300_060 Hb_001300_060 Hb_006275_040--Hb_001300_060 Hb_003057_040 Hb_003057_040 Hb_006275_040--Hb_003057_040 Hb_010308_010 Hb_010308_010 Hb_006275_040--Hb_010308_010 Hb_023714_010 Hb_023714_010 Hb_006275_040--Hb_023714_010 Hb_000935_060--Hb_000926_240 Hb_000935_060--Hb_010068_010 Hb_160479_010 Hb_160479_010 Hb_000935_060--Hb_160479_010 Hb_001404_060 Hb_001404_060 Hb_073870_010--Hb_001404_060 Hb_006103_050 Hb_006103_050 Hb_073870_010--Hb_006103_050 Hb_007138_010 Hb_007138_010 Hb_073870_010--Hb_007138_010 Hb_100953_010 Hb_100953_010 Hb_073870_010--Hb_100953_010 Hb_073870_010--Hb_000935_060 Hb_001369_510 Hb_001369_510 Hb_073870_010--Hb_001369_510 Hb_005348_020--Hb_000740_140 Hb_034858_010 Hb_034858_010 Hb_005348_020--Hb_034858_010 Hb_005348_020--Hb_000926_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0628274 0.558518 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.115164 0

CAGE analysis