Hb_001369_510

Information

Type -
Description -
Location Contig1369: 429835-430296
Sequence    

Annotation

kegg
ID bdi:104584029
description uncharacterized LOC104584029
nr
ID XP_012441796.1
description PREDICTED: uncharacterized protein LOC105766768 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID B8A767
description Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_03168 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_510 0.0 - - PREDICTED: uncharacterized protein LOC105766768 [Gossypium raimondii]
2 Hb_100953_010 0.0192667727 - - hypothetical protein JCGZ_10310 [Jatropha curcas]
3 Hb_007138_010 0.0434108852 - - PREDICTED: putative laccase-9 [Jatropha curcas]
4 Hb_005389_030 0.0507760593 - - hypothetical protein VITISV_023348 [Vitis vinifera]
5 Hb_005357_040 0.076295231 - - gibberellin 20-oxidase, putative [Ricinus communis]
6 Hb_000028_450 0.0800532071 - - PREDICTED: monoglyceride lipase-like [Jatropha curcas]
7 Hb_033691_010 0.0806177716 - - Lignin-forming anionic peroxidase precursor, putative [Ricinus communis]
8 Hb_003082_090 0.0879643831 - - hypothetical protein POPTR_0013s099451g, partial [Populus trichocarpa]
9 Hb_002217_400 0.089165561 - - polynucleotidyl transferase, ribonuclease H-like protein [Arabidopsis thaliana]
10 Hb_163989_010 0.0894341667 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000935_060 0.0905422884 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 8-like [Jatropha curcas]
12 Hb_073870_010 0.0910880108 - - hypothetical protein RCOM_0725510 [Ricinus communis]
13 Hb_002641_090 0.0917184995 - - PREDICTED: uncharacterized protein LOC105643559 [Jatropha curcas]
14 Hb_138585_070 0.0983210444 - - conserved hypothetical protein [Ricinus communis]
15 Hb_160479_010 0.0987148684 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
16 Hb_002267_110 0.0987737425 - - -
17 Hb_070266_010 0.0998590845 - - LRR.XII-like protein, partial [Platanus x acerifolia]
18 Hb_001404_060 0.1022788412 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
19 Hb_004102_150 0.1029290284 - - Late embryogenesis abundant protein D-7, putative [Ricinus communis]
20 Hb_000617_160 0.10383131 - - -

Gene co-expression network

sample Hb_001369_510 Hb_001369_510 Hb_100953_010 Hb_100953_010 Hb_001369_510--Hb_100953_010 Hb_007138_010 Hb_007138_010 Hb_001369_510--Hb_007138_010 Hb_005389_030 Hb_005389_030 Hb_001369_510--Hb_005389_030 Hb_005357_040 Hb_005357_040 Hb_001369_510--Hb_005357_040 Hb_000028_450 Hb_000028_450 Hb_001369_510--Hb_000028_450 Hb_033691_010 Hb_033691_010 Hb_001369_510--Hb_033691_010 Hb_100953_010--Hb_007138_010 Hb_100953_010--Hb_005389_030 Hb_100953_010--Hb_005357_040 Hb_100953_010--Hb_000028_450 Hb_073870_010 Hb_073870_010 Hb_100953_010--Hb_073870_010 Hb_007138_010--Hb_005389_030 Hb_007138_010--Hb_073870_010 Hb_001404_060 Hb_001404_060 Hb_007138_010--Hb_001404_060 Hb_007138_010--Hb_005357_040 Hb_005389_030--Hb_005357_040 Hb_005389_030--Hb_000028_450 Hb_002217_400 Hb_002217_400 Hb_005389_030--Hb_002217_400 Hb_138585_070 Hb_138585_070 Hb_005389_030--Hb_138585_070 Hb_005357_040--Hb_000028_450 Hb_005357_040--Hb_138585_070 Hb_000617_160 Hb_000617_160 Hb_005357_040--Hb_000617_160 Hb_005357_040--Hb_002217_400 Hb_000732_200 Hb_000732_200 Hb_005357_040--Hb_000732_200 Hb_000028_450--Hb_002217_400 Hb_003082_090 Hb_003082_090 Hb_000028_450--Hb_003082_090 Hb_000028_450--Hb_138585_070 Hb_000028_450--Hb_000617_160 Hb_160479_010 Hb_160479_010 Hb_033691_010--Hb_160479_010 Hb_010068_010 Hb_010068_010 Hb_033691_010--Hb_010068_010 Hb_051900_020 Hb_051900_020 Hb_033691_010--Hb_051900_020 Hb_000926_240 Hb_000926_240 Hb_033691_010--Hb_000926_240 Hb_041332_010 Hb_041332_010 Hb_033691_010--Hb_041332_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.108106 0.406664 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0504839 0

CAGE analysis