Hb_000617_160

Information

Type -
Description -
Location Contig617: 107232-110011
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51275: 108552-137057
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000617_160 0.0 - - -
2 Hb_138585_070 0.0068402667 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000732_200 0.0155646784 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005357_040 0.0276565498 - - gibberellin 20-oxidase, putative [Ricinus communis]
5 Hb_002217_400 0.0317558799 - - polynucleotidyl transferase, ribonuclease H-like protein [Arabidopsis thaliana]
6 Hb_000028_450 0.0325796293 - - PREDICTED: monoglyceride lipase-like [Jatropha curcas]
7 Hb_000984_280 0.0480571517 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2 [Jatropha curcas]
8 Hb_005389_030 0.0532718658 - - hypothetical protein VITISV_023348 [Vitis vinifera]
9 Hb_003082_090 0.0533479514 - - hypothetical protein POPTR_0013s099451g, partial [Populus trichocarpa]
10 Hb_001242_170 0.0677555944 - - conserved hypothetical protein [Ricinus communis]
11 Hb_180864_010 0.0754032127 - - hypothetical protein B456_010G097000 [Gossypium raimondii]
12 Hb_000504_060 0.0779960609 - - Cell division cycle protein cdt2, putative [Ricinus communis]
13 Hb_085600_010 0.0814517993 - - PREDICTED: peroxidase 24-like [Jatropha curcas]
14 Hb_007138_010 0.0865972753 - - PREDICTED: putative laccase-9 [Jatropha curcas]
15 Hb_100953_010 0.0902167184 - - hypothetical protein JCGZ_10310 [Jatropha curcas]
16 Hb_005551_070 0.097611237 - - PREDICTED: uncharacterized protein LOC105635822 isoform X1 [Jatropha curcas]
17 Hb_004598_020 0.0984980135 transcription factor TF Family: ERF Transcriptional factor TINY, putative [Ricinus communis]
18 Hb_006103_050 0.0996497174 - - -
19 Hb_163989_010 0.1008407812 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002759_200 0.1018493083 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000617_160 Hb_000617_160 Hb_138585_070 Hb_138585_070 Hb_000617_160--Hb_138585_070 Hb_000732_200 Hb_000732_200 Hb_000617_160--Hb_000732_200 Hb_005357_040 Hb_005357_040 Hb_000617_160--Hb_005357_040 Hb_002217_400 Hb_002217_400 Hb_000617_160--Hb_002217_400 Hb_000028_450 Hb_000028_450 Hb_000617_160--Hb_000028_450 Hb_000984_280 Hb_000984_280 Hb_000617_160--Hb_000984_280 Hb_138585_070--Hb_005357_040 Hb_138585_070--Hb_000732_200 Hb_138585_070--Hb_000028_450 Hb_138585_070--Hb_002217_400 Hb_005389_030 Hb_005389_030 Hb_138585_070--Hb_005389_030 Hb_000732_200--Hb_000984_280 Hb_000732_200--Hb_002217_400 Hb_000732_200--Hb_005357_040 Hb_000732_200--Hb_000028_450 Hb_005357_040--Hb_000028_450 Hb_005357_040--Hb_005389_030 Hb_005357_040--Hb_002217_400 Hb_002217_400--Hb_000028_450 Hb_003082_090 Hb_003082_090 Hb_002217_400--Hb_003082_090 Hb_000028_450--Hb_003082_090 Hb_000028_450--Hb_005389_030 Hb_001242_170 Hb_001242_170 Hb_000984_280--Hb_001242_170 Hb_085600_010 Hb_085600_010 Hb_000984_280--Hb_085600_010 Hb_180864_010 Hb_180864_010 Hb_000984_280--Hb_180864_010 Hb_000504_060 Hb_000504_060 Hb_000984_280--Hb_000504_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0853004 0.190446 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0395778 0

CAGE analysis