Hb_138585_070

Information

Type -
Description -
Location Contig138585: 54580-55305
Sequence    

Annotation

kegg
ID rcu:RCOM_1504680
description hypothetical protein
nr
ID XP_002511115.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID B9RA90
description CASP-like protein 1F1 OS=Ricinus communis GN=RCOM_1504680 PE=2 SV=1
trembl
ID M5WAT9
description CASP-like protein OS=Prunus persica GN=PRUPE_ppa012166mg PE=3 SV=1
Gene Ontology
ID GO:0016020
description casp-like protein poptrdraft_823430

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_138585_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000617_160 0.0068402667 - - -
3 Hb_005357_040 0.0222073383 - - gibberellin 20-oxidase, putative [Ricinus communis]
4 Hb_000732_200 0.0222285324 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000028_450 0.0310737175 - - PREDICTED: monoglyceride lipase-like [Jatropha curcas]
6 Hb_002217_400 0.0323985481 - - polynucleotidyl transferase, ribonuclease H-like protein [Arabidopsis thaliana]
7 Hb_005389_030 0.0480147808 - - hypothetical protein VITISV_023348 [Vitis vinifera]
8 Hb_003082_090 0.0541158956 - - hypothetical protein POPTR_0013s099451g, partial [Populus trichocarpa]
9 Hb_000984_280 0.0548731068 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2 [Jatropha curcas]
10 Hb_001242_170 0.0744884996 - - conserved hypothetical protein [Ricinus communis]
11 Hb_007138_010 0.0799104997 - - PREDICTED: putative laccase-9 [Jatropha curcas]
12 Hb_180864_010 0.0814992781 - - hypothetical protein B456_010G097000 [Gossypium raimondii]
13 Hb_000504_060 0.0835846934 - - Cell division cycle protein cdt2, putative [Ricinus communis]
14 Hb_100953_010 0.0841918963 - - hypothetical protein JCGZ_10310 [Jatropha curcas]
15 Hb_085600_010 0.0882601549 - - PREDICTED: peroxidase 24-like [Jatropha curcas]
16 Hb_006103_050 0.0942467319 - - -
17 Hb_005551_070 0.0956843314 - - PREDICTED: uncharacterized protein LOC105635822 isoform X1 [Jatropha curcas]
18 Hb_163989_010 0.0982444609 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001369_510 0.0983210444 - - PREDICTED: uncharacterized protein LOC105766768 [Gossypium raimondii]
20 Hb_004598_020 0.1010338812 transcription factor TF Family: ERF Transcriptional factor TINY, putative [Ricinus communis]

Gene co-expression network

sample Hb_138585_070 Hb_138585_070 Hb_000617_160 Hb_000617_160 Hb_138585_070--Hb_000617_160 Hb_005357_040 Hb_005357_040 Hb_138585_070--Hb_005357_040 Hb_000732_200 Hb_000732_200 Hb_138585_070--Hb_000732_200 Hb_000028_450 Hb_000028_450 Hb_138585_070--Hb_000028_450 Hb_002217_400 Hb_002217_400 Hb_138585_070--Hb_002217_400 Hb_005389_030 Hb_005389_030 Hb_138585_070--Hb_005389_030 Hb_000617_160--Hb_000732_200 Hb_000617_160--Hb_005357_040 Hb_000617_160--Hb_002217_400 Hb_000617_160--Hb_000028_450 Hb_000984_280 Hb_000984_280 Hb_000617_160--Hb_000984_280 Hb_005357_040--Hb_000028_450 Hb_005357_040--Hb_005389_030 Hb_005357_040--Hb_002217_400 Hb_005357_040--Hb_000732_200 Hb_000732_200--Hb_000984_280 Hb_000732_200--Hb_002217_400 Hb_000732_200--Hb_000028_450 Hb_000028_450--Hb_002217_400 Hb_003082_090 Hb_003082_090 Hb_000028_450--Hb_003082_090 Hb_000028_450--Hb_005389_030 Hb_002217_400--Hb_003082_090 Hb_100953_010 Hb_100953_010 Hb_005389_030--Hb_100953_010 Hb_005389_030--Hb_002217_400 Hb_007138_010 Hb_007138_010 Hb_005389_030--Hb_007138_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0834031 0.193249 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0399531 0

CAGE analysis