Hb_007138_010

Information

Type -
Description -
Location Contig7138: 13450-15193
Sequence    

Annotation

kegg
ID rcu:RCOM_0298350
description laccase, putative (EC:1.10.3.3)
nr
ID XP_012075902.1
description PREDICTED: putative laccase-9 [Jatropha curcas]
swissprot
ID Q9FY79
description Laccase-14 OS=Arabidopsis thaliana GN=LAC14 PE=2 SV=1
trembl
ID A0A067KS67
description Laccase OS=Jatropha curcas GN=JCGZ_11007 PE=3 SV=1
Gene Ontology
ID GO:0048046
description laccase-14-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55400: 13492-13964
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007138_010 0.0 - - PREDICTED: putative laccase-9 [Jatropha curcas]
2 Hb_100953_010 0.0251936822 - - hypothetical protein JCGZ_10310 [Jatropha curcas]
3 Hb_001369_510 0.0434108852 - - PREDICTED: uncharacterized protein LOC105766768 [Gossypium raimondii]
4 Hb_005389_030 0.045817252 - - hypothetical protein VITISV_023348 [Vitis vinifera]
5 Hb_073870_010 0.0528080339 - - hypothetical protein RCOM_0725510 [Ricinus communis]
6 Hb_001404_060 0.0602120437 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
7 Hb_005357_040 0.0619065673 - - gibberellin 20-oxidase, putative [Ricinus communis]
8 Hb_006103_050 0.0748790038 - - -
9 Hb_000028_450 0.076176872 - - PREDICTED: monoglyceride lipase-like [Jatropha curcas]
10 Hb_138585_070 0.0799104997 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002217_400 0.0861479251 - - polynucleotidyl transferase, ribonuclease H-like protein [Arabidopsis thaliana]
12 Hb_000617_160 0.0865972753 - - -
13 Hb_000935_060 0.0932503611 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 8-like [Jatropha curcas]
14 Hb_163989_010 0.0950380093 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003082_090 0.0952887833 - - hypothetical protein POPTR_0013s099451g, partial [Populus trichocarpa]
16 Hb_000320_240 0.0954068687 - - multicopper oxidase, putative [Ricinus communis]
17 Hb_000732_200 0.1020405489 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004102_150 0.102872295 - - Late embryogenesis abundant protein D-7, putative [Ricinus communis]
19 Hb_002641_090 0.1056782958 - - PREDICTED: uncharacterized protein LOC105643559 [Jatropha curcas]
20 Hb_033691_010 0.1198098964 - - Lignin-forming anionic peroxidase precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_007138_010 Hb_007138_010 Hb_100953_010 Hb_100953_010 Hb_007138_010--Hb_100953_010 Hb_001369_510 Hb_001369_510 Hb_007138_010--Hb_001369_510 Hb_005389_030 Hb_005389_030 Hb_007138_010--Hb_005389_030 Hb_073870_010 Hb_073870_010 Hb_007138_010--Hb_073870_010 Hb_001404_060 Hb_001404_060 Hb_007138_010--Hb_001404_060 Hb_005357_040 Hb_005357_040 Hb_007138_010--Hb_005357_040 Hb_100953_010--Hb_001369_510 Hb_100953_010--Hb_005389_030 Hb_100953_010--Hb_005357_040 Hb_000028_450 Hb_000028_450 Hb_100953_010--Hb_000028_450 Hb_100953_010--Hb_073870_010 Hb_001369_510--Hb_005389_030 Hb_001369_510--Hb_005357_040 Hb_001369_510--Hb_000028_450 Hb_033691_010 Hb_033691_010 Hb_001369_510--Hb_033691_010 Hb_005389_030--Hb_005357_040 Hb_005389_030--Hb_000028_450 Hb_002217_400 Hb_002217_400 Hb_005389_030--Hb_002217_400 Hb_138585_070 Hb_138585_070 Hb_005389_030--Hb_138585_070 Hb_073870_010--Hb_001404_060 Hb_006103_050 Hb_006103_050 Hb_073870_010--Hb_006103_050 Hb_000935_060 Hb_000935_060 Hb_073870_010--Hb_000935_060 Hb_073870_010--Hb_001369_510 Hb_001404_060--Hb_006103_050 Hb_001404_060--Hb_100953_010 Hb_005551_070 Hb_005551_070 Hb_001404_060--Hb_005551_070 Hb_004330_050 Hb_004330_050 Hb_001404_060--Hb_004330_050 Hb_005357_040--Hb_000028_450 Hb_005357_040--Hb_138585_070 Hb_000617_160 Hb_000617_160 Hb_005357_040--Hb_000617_160 Hb_005357_040--Hb_002217_400 Hb_000732_200 Hb_000732_200 Hb_005357_040--Hb_000732_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.171068 0.627901 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.109411 0

CAGE analysis