Hb_006103_050

Information

Type -
Description -
Location Contig6103: 65258-65884
Sequence    

Annotation

kegg
ID rcu:RCOM_1326830
description transcription factor, putative
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006103_050 0.0 - - -
2 Hb_001404_060 0.0271616378 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
3 Hb_073870_010 0.0485791145 - - hypothetical protein RCOM_0725510 [Ricinus communis]
4 Hb_005551_070 0.059993121 - - PREDICTED: uncharacterized protein LOC105635822 isoform X1 [Jatropha curcas]
5 Hb_007138_010 0.0748790038 - - PREDICTED: putative laccase-9 [Jatropha curcas]
6 Hb_004330_050 0.0839772249 - - conserved hypothetical protein [Ricinus communis]
7 Hb_010308_010 0.0896726932 - - hypothetical protein JCGZ_22818 [Jatropha curcas]
8 Hb_000496_080 0.0902254579 - - Proteinase inhibitor, putative [Ricinus communis]
9 Hb_005357_040 0.0933036397 - - gibberellin 20-oxidase, putative [Ricinus communis]
10 Hb_138585_070 0.0942467319 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005305_170 0.0945453785 - - PREDICTED: probable beta-1,3-galactosyltransferase 8 [Jatropha curcas]
12 Hb_020112_010 0.0984879503 - - acyltransferase, putative [Ricinus communis]
13 Hb_005389_030 0.0986043831 - - hypothetical protein VITISV_023348 [Vitis vinifera]
14 Hb_100953_010 0.0993002406 - - hypothetical protein JCGZ_10310 [Jatropha curcas]
15 Hb_000617_160 0.0996497174 - - -
16 Hb_000046_550 0.1049765059 - - PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Jatropha curcas]
17 Hb_000732_200 0.1098900767 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001300_060 0.1130751865 - - PREDICTED: monothiol glutaredoxin-S6-like [Jatropha curcas]
19 Hb_000320_240 0.1135957482 - - multicopper oxidase, putative [Ricinus communis]
20 Hb_000028_450 0.1136190126 - - PREDICTED: monoglyceride lipase-like [Jatropha curcas]

Gene co-expression network

sample Hb_006103_050 Hb_006103_050 Hb_001404_060 Hb_001404_060 Hb_006103_050--Hb_001404_060 Hb_073870_010 Hb_073870_010 Hb_006103_050--Hb_073870_010 Hb_005551_070 Hb_005551_070 Hb_006103_050--Hb_005551_070 Hb_007138_010 Hb_007138_010 Hb_006103_050--Hb_007138_010 Hb_004330_050 Hb_004330_050 Hb_006103_050--Hb_004330_050 Hb_010308_010 Hb_010308_010 Hb_006103_050--Hb_010308_010 Hb_001404_060--Hb_073870_010 Hb_001404_060--Hb_007138_010 Hb_100953_010 Hb_100953_010 Hb_001404_060--Hb_100953_010 Hb_001404_060--Hb_005551_070 Hb_001404_060--Hb_004330_050 Hb_073870_010--Hb_007138_010 Hb_073870_010--Hb_100953_010 Hb_000935_060 Hb_000935_060 Hb_073870_010--Hb_000935_060 Hb_001369_510 Hb_001369_510 Hb_073870_010--Hb_001369_510 Hb_005305_170 Hb_005305_170 Hb_005551_070--Hb_005305_170 Hb_000046_550 Hb_000046_550 Hb_005551_070--Hb_000046_550 Hb_003858_050 Hb_003858_050 Hb_005551_070--Hb_003858_050 Hb_000127_050 Hb_000127_050 Hb_005551_070--Hb_000127_050 Hb_002759_200 Hb_002759_200 Hb_005551_070--Hb_002759_200 Hb_007138_010--Hb_100953_010 Hb_007138_010--Hb_001369_510 Hb_005389_030 Hb_005389_030 Hb_007138_010--Hb_005389_030 Hb_005357_040 Hb_005357_040 Hb_007138_010--Hb_005357_040 Hb_004330_050--Hb_010308_010 Hb_000496_080 Hb_000496_080 Hb_004330_050--Hb_000496_080 Hb_020112_010 Hb_020112_010 Hb_004330_050--Hb_020112_010 Hb_001300_060 Hb_001300_060 Hb_004330_050--Hb_001300_060 Hb_000329_570 Hb_000329_570 Hb_004330_050--Hb_000329_570 Hb_000743_070 Hb_000743_070 Hb_004330_050--Hb_000743_070 Hb_010308_010--Hb_000496_080 Hb_010308_010--Hb_020112_010 Hb_010308_010--Hb_001300_060 Hb_010308_010--Hb_000329_570 Hb_010308_010--Hb_000743_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.168679 0.576878 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.166717 0

CAGE analysis