Hb_003858_050

Information

Type -
Description -
Location Contig3858: 58280-59124
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa021882mg
description hypothetical protein
nr
ID XP_007199217.1
description hypothetical protein PRUPE_ppa021882mg [Prunus persica]
swissprot
ID Q6K5Q0
description Putative germin-like protein 2-1 OS=Oryza sativa subsp. japonica GN=Os02g0491600 PE=3 SV=1
trembl
ID M5VI14
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021882mg PE=4 SV=1
Gene Ontology
ID GO:0005576
description germin-like protein subfamily 1 member 14

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003858_050 0.0 - - hypothetical protein PRUPE_ppa021882mg [Prunus persica]
2 Hb_000046_550 0.031950251 - - PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Jatropha curcas]
3 Hb_005305_170 0.0432750861 - - PREDICTED: probable beta-1,3-galactosyltransferase 8 [Jatropha curcas]
4 Hb_000127_050 0.0630320909 - - -
5 Hb_002759_200 0.0693012641 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 2 [Jatropha curcas]
6 Hb_004116_090 0.072954827 - - -
7 Hb_005551_070 0.0776570498 - - PREDICTED: uncharacterized protein LOC105635822 isoform X1 [Jatropha curcas]
8 Hb_000504_060 0.1088730298 - - Cell division cycle protein cdt2, putative [Ricinus communis]
9 Hb_000743_070 0.1120827798 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_21060 [Jatropha curcas]
10 Hb_160814_010 0.1197235784 - - PREDICTED: probable sulfate transporter 3.5 isoform X1 [Jatropha curcas]
11 Hb_005356_030 0.122490041 - - protein binding protein, putative [Ricinus communis]
12 Hb_103452_010 0.1276670503 - - hypothetical protein VITISV_027174 [Vitis vinifera]
13 Hb_001006_050 0.130470439 - - PREDICTED: uncharacterized protein LOC101777526 [Setaria italica]
14 Hb_006103_050 0.1367343406 - - -
15 Hb_020112_010 0.1399946348 - - acyltransferase, putative [Ricinus communis]
16 Hb_135673_010 0.1418110473 - - Germin-like protein subfamily 1 member 6 precursor [Populus trichocarpa]
17 Hb_151094_020 0.1422704174 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Prunus mume]
18 Hb_000732_200 0.1437604677 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000984_280 0.1460811106 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2 [Jatropha curcas]
20 Hb_004330_050 0.1487591498 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003858_050 Hb_003858_050 Hb_000046_550 Hb_000046_550 Hb_003858_050--Hb_000046_550 Hb_005305_170 Hb_005305_170 Hb_003858_050--Hb_005305_170 Hb_000127_050 Hb_000127_050 Hb_003858_050--Hb_000127_050 Hb_002759_200 Hb_002759_200 Hb_003858_050--Hb_002759_200 Hb_004116_090 Hb_004116_090 Hb_003858_050--Hb_004116_090 Hb_005551_070 Hb_005551_070 Hb_003858_050--Hb_005551_070 Hb_000046_550--Hb_005305_170 Hb_000046_550--Hb_005551_070 Hb_000046_550--Hb_000127_050 Hb_000046_550--Hb_002759_200 Hb_000743_070 Hb_000743_070 Hb_000046_550--Hb_000743_070 Hb_005305_170--Hb_005551_070 Hb_005305_170--Hb_002759_200 Hb_005305_170--Hb_000127_050 Hb_006103_050 Hb_006103_050 Hb_005305_170--Hb_006103_050 Hb_000127_050--Hb_000743_070 Hb_000127_050--Hb_005551_070 Hb_160814_010 Hb_160814_010 Hb_000127_050--Hb_160814_010 Hb_000504_060 Hb_000504_060 Hb_002759_200--Hb_000504_060 Hb_000984_280 Hb_000984_280 Hb_002759_200--Hb_000984_280 Hb_002759_200--Hb_005551_070 Hb_005356_030 Hb_005356_030 Hb_004116_090--Hb_005356_030 Hb_103452_010 Hb_103452_010 Hb_004116_090--Hb_103452_010 Hb_001006_050 Hb_001006_050 Hb_004116_090--Hb_001006_050 Hb_135673_010 Hb_135673_010 Hb_004116_090--Hb_135673_010 Hb_151094_020 Hb_151094_020 Hb_004116_090--Hb_151094_020 Hb_005551_070--Hb_006103_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0578686 0.101118 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0549056 0

CAGE analysis