Hb_005356_030

Information

Type -
Description -
Location Contig5356: 40726-42288
Sequence    

Annotation

kegg
ID rcu:RCOM_1078770
description protein binding protein, putative
nr
ID XP_002514865.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID Q9FGH9
description Exocyst complex component EXO70B1 OS=Arabidopsis thaliana GN=EXO70B1 PE=1 SV=1
trembl
ID B9RM96
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1078770 PE=4 SV=1
Gene Ontology
ID GO:0044464
description exocyst complex component exo70b1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005356_030 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_103452_010 0.0135456782 - - hypothetical protein VITISV_027174 [Vitis vinifera]
3 Hb_135673_010 0.0253422989 - - Germin-like protein subfamily 1 member 6 precursor [Populus trichocarpa]
4 Hb_001006_050 0.0311607489 - - PREDICTED: uncharacterized protein LOC101777526 [Setaria italica]
5 Hb_004116_090 0.0526172106 - - -
6 Hb_151094_020 0.082904791 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Prunus mume]
7 Hb_000002_150 0.1014752501 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003858_050 0.122490041 - - hypothetical protein PRUPE_ppa021882mg [Prunus persica]
9 Hb_003020_340 0.1228313192 - - PREDICTED: uncharacterized protein LOC105631327 [Jatropha curcas]
10 Hb_160814_010 0.1258505398 - - PREDICTED: probable sulfate transporter 3.5 isoform X1 [Jatropha curcas]
11 Hb_147060_010 0.1310126948 - - PREDICTED: probable glutathione S-transferase parC [Populus euphratica]
12 Hb_010812_130 0.1322321539 - - PREDICTED: hydroxyacylglutathione hydrolase cytoplasmic [Jatropha curcas]
13 Hb_002498_290 0.1353172851 - - PREDICTED: autophagy-related protein 8C-like isoform X2 [Elaeis guineensis]
14 Hb_000438_030 0.1359863091 - - -
15 Hb_030736_030 0.1455836285 - - hypothetical protein VITISV_006651 [Vitis vinifera]
16 Hb_046615_040 0.1489261251 - - unnamed protein product [Vitis vinifera]
17 Hb_002559_010 0.1498613332 - - hypothetical protein JCGZ_06274 [Jatropha curcas]
18 Hb_000127_050 0.1506552692 - - -
19 Hb_000046_550 0.153773582 - - PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Jatropha curcas]
20 Hb_000679_280 0.1551441721 - - hypothetical protein POPTR_0006s27120g [Populus trichocarpa]

Gene co-expression network

sample Hb_005356_030 Hb_005356_030 Hb_103452_010 Hb_103452_010 Hb_005356_030--Hb_103452_010 Hb_135673_010 Hb_135673_010 Hb_005356_030--Hb_135673_010 Hb_001006_050 Hb_001006_050 Hb_005356_030--Hb_001006_050 Hb_004116_090 Hb_004116_090 Hb_005356_030--Hb_004116_090 Hb_151094_020 Hb_151094_020 Hb_005356_030--Hb_151094_020 Hb_000002_150 Hb_000002_150 Hb_005356_030--Hb_000002_150 Hb_103452_010--Hb_135673_010 Hb_103452_010--Hb_001006_050 Hb_103452_010--Hb_004116_090 Hb_103452_010--Hb_151094_020 Hb_103452_010--Hb_000002_150 Hb_135673_010--Hb_001006_050 Hb_135673_010--Hb_004116_090 Hb_135673_010--Hb_151094_020 Hb_002498_290 Hb_002498_290 Hb_135673_010--Hb_002498_290 Hb_001006_050--Hb_151094_020 Hb_001006_050--Hb_004116_090 Hb_147060_010 Hb_147060_010 Hb_001006_050--Hb_147060_010 Hb_003858_050 Hb_003858_050 Hb_004116_090--Hb_003858_050 Hb_004116_090--Hb_151094_020 Hb_151094_020--Hb_147060_010 Hb_010812_130 Hb_010812_130 Hb_151094_020--Hb_010812_130 Hb_000438_030 Hb_000438_030 Hb_151094_020--Hb_000438_030 Hb_003020_340 Hb_003020_340 Hb_000002_150--Hb_003020_340 Hb_160814_010 Hb_160814_010 Hb_000002_150--Hb_160814_010 Hb_000147_010 Hb_000147_010 Hb_000002_150--Hb_000147_010 Hb_000925_120 Hb_000925_120 Hb_000002_150--Hb_000925_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.118362 0.11943 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.121545 0

CAGE analysis