Hb_147060_010

Information

Type -
Description -
Location Contig147060: 3204-7457
Sequence    

Annotation

kegg
ID rcu:RCOM_1541840
description glutathione s-transferase, putative (EC:4.4.1.5)
nr
ID XP_011029535.1
description PREDICTED: probable glutathione S-transferase parC [Populus euphratica]
swissprot
ID Q8L7C9
description Glutathione S-transferase U20 OS=Arabidopsis thaliana GN=GSTU20 PE=1 SV=1
trembl
ID F6HR73
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0093g00160 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_147060_010 0.0 - - PREDICTED: probable glutathione S-transferase parC [Populus euphratica]
2 Hb_010812_130 0.0032995124 - - PREDICTED: hydroxyacylglutathione hydrolase cytoplasmic [Jatropha curcas]
3 Hb_000438_030 0.0202660909 - - -
4 Hb_046615_040 0.0284786124 - - unnamed protein product [Vitis vinifera]
5 Hb_003010_050 0.039787954 - - -
6 Hb_151094_020 0.0504873264 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Prunus mume]
7 Hb_005306_060 0.0674046815 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
8 Hb_000163_020 0.0989843068 - - -
9 Hb_001006_050 0.1025447622 - - PREDICTED: uncharacterized protein LOC101777526 [Setaria italica]
10 Hb_004116_090 0.1170128374 - - -
11 Hb_103452_010 0.1198230272 - - hypothetical protein VITISV_027174 [Vitis vinifera]
12 Hb_135673_010 0.1199211788 - - Germin-like protein subfamily 1 member 6 precursor [Populus trichocarpa]
13 Hb_010369_020 0.1209464408 - - hypothetical protein JCGZ_21088 [Jatropha curcas]
14 Hb_002498_290 0.1291178614 - - PREDICTED: autophagy-related protein 8C-like isoform X2 [Elaeis guineensis]
15 Hb_005356_030 0.1310126948 - - protein binding protein, putative [Ricinus communis]
16 Hb_002759_200 0.1361894162 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 2 [Jatropha curcas]
17 Hb_000979_070 0.1380005542 - - PREDICTED: endoglucanase 8-like [Jatropha curcas]
18 Hb_001862_160 0.1392083202 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Jatropha curcas]
19 Hb_030736_030 0.1431848397 - - hypothetical protein VITISV_006651 [Vitis vinifera]
20 Hb_002766_070 0.1463823572 transcription factor TF Family: MYB hypothetical protein JCGZ_17894 [Jatropha curcas]

Gene co-expression network

sample Hb_147060_010 Hb_147060_010 Hb_010812_130 Hb_010812_130 Hb_147060_010--Hb_010812_130 Hb_000438_030 Hb_000438_030 Hb_147060_010--Hb_000438_030 Hb_046615_040 Hb_046615_040 Hb_147060_010--Hb_046615_040 Hb_003010_050 Hb_003010_050 Hb_147060_010--Hb_003010_050 Hb_151094_020 Hb_151094_020 Hb_147060_010--Hb_151094_020 Hb_005306_060 Hb_005306_060 Hb_147060_010--Hb_005306_060 Hb_010812_130--Hb_000438_030 Hb_010812_130--Hb_046615_040 Hb_010812_130--Hb_003010_050 Hb_010812_130--Hb_151094_020 Hb_010812_130--Hb_005306_060 Hb_000438_030--Hb_046615_040 Hb_000438_030--Hb_003010_050 Hb_000438_030--Hb_151094_020 Hb_000438_030--Hb_005306_060 Hb_046615_040--Hb_003010_050 Hb_046615_040--Hb_005306_060 Hb_046615_040--Hb_151094_020 Hb_003010_050--Hb_005306_060 Hb_000163_020 Hb_000163_020 Hb_003010_050--Hb_000163_020 Hb_001006_050 Hb_001006_050 Hb_151094_020--Hb_001006_050 Hb_135673_010 Hb_135673_010 Hb_151094_020--Hb_135673_010 Hb_103452_010 Hb_103452_010 Hb_151094_020--Hb_103452_010 Hb_005306_060--Hb_000163_020 Hb_010369_020 Hb_010369_020 Hb_005306_060--Hb_010369_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.509422 0.388556 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.240838 0

CAGE analysis