Hb_005306_060

Information

Type -
Description -
Location Contig5306: 44461-48543
Sequence    

Annotation

kegg
ID pop:POPTR_0003s04220g
description hypothetical protein
nr
ID XP_012068948.1
description PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
swissprot
ID C4B8C4
description EPIDERMAL PATTERNING FACTOR-like protein 3 OS=Arabidopsis thaliana GN=EPFL3 PE=1 SV=1
trembl
ID A0A067L0M5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24747 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47357: 47791-47967
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005306_060 0.0 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
2 Hb_003010_050 0.0278245393 - - -
3 Hb_000163_020 0.0431131957 - - -
4 Hb_046615_040 0.0471132509 - - unnamed protein product [Vitis vinifera]
5 Hb_010812_130 0.0652861425 - - PREDICTED: hydroxyacylglutathione hydrolase cytoplasmic [Jatropha curcas]
6 Hb_147060_010 0.0674046815 - - PREDICTED: probable glutathione S-transferase parC [Populus euphratica]
7 Hb_010369_020 0.0698077225 - - hypothetical protein JCGZ_21088 [Jatropha curcas]
8 Hb_000438_030 0.0736060778 - - -
9 Hb_002766_070 0.0961603979 transcription factor TF Family: MYB hypothetical protein JCGZ_17894 [Jatropha curcas]
10 Hb_002025_280 0.1102199368 - - PREDICTED: uncharacterized protein LOC105634201 [Jatropha curcas]
11 Hb_151094_020 0.1174125707 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Prunus mume]
12 Hb_074674_010 0.1211571657 - - Cell division cycle protein cdt2, putative [Ricinus communis]
13 Hb_033312_100 0.1231169477 - - -
14 Hb_000140_200 0.133209284 - - PREDICTED: uncharacterized protein LOC105642928 [Jatropha curcas]
15 Hb_001384_030 0.1335888398 - - PREDICTED: uncharacterized protein LOC105049010 [Elaeis guineensis]
16 Hb_085600_010 0.1386441327 - - PREDICTED: peroxidase 24-like [Jatropha curcas]
17 Hb_000504_060 0.1390959779 - - Cell division cycle protein cdt2, putative [Ricinus communis]
18 Hb_000422_040 0.1405101332 - - hypothetical protein CICLE_v10013147mg [Citrus clementina]
19 Hb_023386_070 0.1425029934 - - PREDICTED: probable pectinesterase 68 [Jatropha curcas]
20 Hb_185666_010 0.1450887149 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_005306_060 Hb_005306_060 Hb_003010_050 Hb_003010_050 Hb_005306_060--Hb_003010_050 Hb_000163_020 Hb_000163_020 Hb_005306_060--Hb_000163_020 Hb_046615_040 Hb_046615_040 Hb_005306_060--Hb_046615_040 Hb_010812_130 Hb_010812_130 Hb_005306_060--Hb_010812_130 Hb_147060_010 Hb_147060_010 Hb_005306_060--Hb_147060_010 Hb_010369_020 Hb_010369_020 Hb_005306_060--Hb_010369_020 Hb_003010_050--Hb_046615_040 Hb_003010_050--Hb_010812_130 Hb_003010_050--Hb_147060_010 Hb_000438_030 Hb_000438_030 Hb_003010_050--Hb_000438_030 Hb_003010_050--Hb_000163_020 Hb_000163_020--Hb_010369_020 Hb_000163_020--Hb_046615_040 Hb_074674_010 Hb_074674_010 Hb_000163_020--Hb_074674_010 Hb_000163_020--Hb_000438_030 Hb_046615_040--Hb_010812_130 Hb_046615_040--Hb_147060_010 Hb_046615_040--Hb_000438_030 Hb_151094_020 Hb_151094_020 Hb_046615_040--Hb_151094_020 Hb_010812_130--Hb_147060_010 Hb_010812_130--Hb_000438_030 Hb_010812_130--Hb_151094_020 Hb_147060_010--Hb_000438_030 Hb_147060_010--Hb_151094_020 Hb_010369_020--Hb_074674_010 Hb_001384_030 Hb_001384_030 Hb_010369_020--Hb_001384_030 Hb_061361_010 Hb_061361_010 Hb_010369_020--Hb_061361_010 Hb_023386_070 Hb_023386_070 Hb_010369_020--Hb_023386_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0572904 0.0432471 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0178137 0

CAGE analysis