Hb_023386_070

Information

Type -
Description -
Location Contig23386: 50099-53150
Sequence    

Annotation

kegg
ID pop:POPTR_0003s07460g
description POPTRDRAFT_415166; hypothetical protein
nr
ID XP_012069980.1
description PREDICTED: probable pectinesterase 68 [Jatropha curcas]
swissprot
ID Q8LPF3
description Probable pectinesterase 68 OS=Arabidopsis thaliana GN=PME68 PE=2 SV=1
trembl
ID A0A067L5U6
description Pectinesterase OS=Jatropha curcas GN=JCGZ_03401 PE=3 SV=1
Gene Ontology
ID GO:0005618
description probable pectinesterase 68

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24562: 50236-53287 , PASA_asmbl_24563: 50961-51377
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023386_070 0.0 - - PREDICTED: probable pectinesterase 68 [Jatropha curcas]
2 Hb_001205_280 0.0546757986 - - PREDICTED: probable polyol transporter 6 [Jatropha curcas]
3 Hb_074674_010 0.0625795327 - - Cell division cycle protein cdt2, putative [Ricinus communis]
4 Hb_001384_030 0.0643670761 - - PREDICTED: uncharacterized protein LOC105049010 [Elaeis guineensis]
5 Hb_061361_010 0.0721124319 - - kinase, putative [Ricinus communis]
6 Hb_000025_770 0.076070124 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
7 Hb_010369_020 0.0886698923 - - hypothetical protein JCGZ_21088 [Jatropha curcas]
8 Hb_000176_040 0.1043988211 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHR3 isoform X2 [Jatropha curcas]
9 Hb_000163_020 0.1066207583 - - -
10 Hb_005066_050 0.1100465636 - - -
11 Hb_046204_010 0.1176098162 - - PREDICTED: peroxidase 5-like [Jatropha curcas]
12 Hb_003368_070 0.1189153747 - - PREDICTED: uncharacterized protein LOC105109387 [Populus euphratica]
13 Hb_000347_310 0.1286882049 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 3-like [Jatropha curcas]
14 Hb_001699_070 0.131862989 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000621_100 0.1358628769 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000422_040 0.1387145572 - - hypothetical protein CICLE_v10013147mg [Citrus clementina]
17 Hb_004631_040 0.1387957218 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
18 Hb_000890_140 0.139246188 - - PREDICTED: uncharacterized protein LOC105646185 [Jatropha curcas]
19 Hb_000035_190 0.1416833179 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005306_060 0.1425029934 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]

Gene co-expression network

sample Hb_023386_070 Hb_023386_070 Hb_001205_280 Hb_001205_280 Hb_023386_070--Hb_001205_280 Hb_074674_010 Hb_074674_010 Hb_023386_070--Hb_074674_010 Hb_001384_030 Hb_001384_030 Hb_023386_070--Hb_001384_030 Hb_061361_010 Hb_061361_010 Hb_023386_070--Hb_061361_010 Hb_000025_770 Hb_000025_770 Hb_023386_070--Hb_000025_770 Hb_010369_020 Hb_010369_020 Hb_023386_070--Hb_010369_020 Hb_001205_280--Hb_001384_030 Hb_001205_280--Hb_074674_010 Hb_001205_280--Hb_061361_010 Hb_001205_280--Hb_000025_770 Hb_000347_310 Hb_000347_310 Hb_001205_280--Hb_000347_310 Hb_074674_010--Hb_001384_030 Hb_074674_010--Hb_010369_020 Hb_046204_010 Hb_046204_010 Hb_074674_010--Hb_046204_010 Hb_074674_010--Hb_061361_010 Hb_001384_030--Hb_046204_010 Hb_001384_030--Hb_061361_010 Hb_001384_030--Hb_010369_020 Hb_061361_010--Hb_000025_770 Hb_005066_050 Hb_005066_050 Hb_061361_010--Hb_005066_050 Hb_000621_100 Hb_000621_100 Hb_061361_010--Hb_000621_100 Hb_000025_770--Hb_005066_050 Hb_000025_770--Hb_000621_100 Hb_000025_770--Hb_074674_010 Hb_000163_020 Hb_000163_020 Hb_010369_020--Hb_000163_020 Hb_005306_060 Hb_005306_060 Hb_010369_020--Hb_005306_060 Hb_010369_020--Hb_061361_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0195704 13.5389 6.80858 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0351729 0.065146 1.58058 0

CAGE analysis