Hb_000347_310

Information

Type -
Description -
Location Contig347: 335561-337601
Sequence    

Annotation

kegg
ID cit:102621598
description guanine nucleotide-binding protein subunit gamma 3-like
nr
ID XP_012068866.1
description PREDICTED: guanine nucleotide-binding protein subunit gamma 3-like [Jatropha curcas]
swissprot
ID Q6AWT8
description Guanine nucleotide-binding protein subunit gamma 3 OS=Arabidopsis thaliana GN=GG3 PE=2 SV=1
trembl
ID G7L7L7
description Uncharacterized protein OS=Medicago truncatula GN=MTR_8g021170 PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36226: 335528-337644
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000347_310 0.0 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 3-like [Jatropha curcas]
2 Hb_006452_210 0.0644217203 - - PREDICTED: putative UPF0481 protein At3g02645 [Jatropha curcas]
3 Hb_001205_280 0.0978307675 - - PREDICTED: probable polyol transporter 6 [Jatropha curcas]
4 Hb_001817_200 0.0988333032 - - hypothetical protein CISIN_1g037825mg [Citrus sinensis]
5 Hb_002259_100 0.0988593023 - - PREDICTED: uncharacterized protein LOC105630152 isoform X1 [Jatropha curcas]
6 Hb_002391_260 0.0989100004 - - hypothetical protein RCOM_0017280 [Ricinus communis]
7 Hb_001571_070 0.0989554725 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
8 Hb_004645_060 0.0991708885 - - PREDICTED: uncharacterized protein LOC105630948 [Jatropha curcas]
9 Hb_000413_090 0.0991920248 - - PREDICTED: transcription factor DYT1 [Jatropha curcas]
10 Hb_001322_060 0.0999673448 - - unnamed protein product [Vitis vinifera]
11 Hb_000003_800 0.099970027 - - conserved hypothetical protein [Ricinus communis]
12 Hb_137288_010 0.1001198661 - - hypothetical protein B456_003G055000 [Gossypium raimondii]
13 Hb_003266_110 0.1002745484 - - ATP binding protein, putative [Ricinus communis]
14 Hb_056196_020 0.1003442673 - - PREDICTED: uncharacterized protein LOC105631532 isoform X1 [Jatropha curcas]
15 Hb_001948_060 0.1007949137 - - PREDICTED: glutathione S-transferase DHAR3, chloroplastic [Jatropha curcas]
16 Hb_009323_010 0.1008097365 - - hypothetical protein POPTR_0008s03350g, partial [Populus trichocarpa]
17 Hb_020479_010 0.1010474929 - - cinnamyl alcohol dehydrogenase [Pyrus pyrifolia]
18 Hb_007552_030 0.1015250823 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_21064 [Jatropha curcas]
19 Hb_187418_010 0.1015881965 - - PREDICTED: TMV resistance protein N-like, partial [Citrus sinensis]
20 Hb_004126_020 0.102736927 - - PREDICTED: uncharacterized protein LOC105649549 [Jatropha curcas]

Gene co-expression network

sample Hb_000347_310 Hb_000347_310 Hb_006452_210 Hb_006452_210 Hb_000347_310--Hb_006452_210 Hb_001205_280 Hb_001205_280 Hb_000347_310--Hb_001205_280 Hb_001817_200 Hb_001817_200 Hb_000347_310--Hb_001817_200 Hb_002259_100 Hb_002259_100 Hb_000347_310--Hb_002259_100 Hb_002391_260 Hb_002391_260 Hb_000347_310--Hb_002391_260 Hb_001571_070 Hb_001571_070 Hb_000347_310--Hb_001571_070 Hb_001948_060 Hb_001948_060 Hb_006452_210--Hb_001948_060 Hb_020479_010 Hb_020479_010 Hb_006452_210--Hb_020479_010 Hb_187418_010 Hb_187418_010 Hb_006452_210--Hb_187418_010 Hb_003266_110 Hb_003266_110 Hb_006452_210--Hb_003266_110 Hb_137288_010 Hb_137288_010 Hb_006452_210--Hb_137288_010 Hb_000003_800 Hb_000003_800 Hb_006452_210--Hb_000003_800 Hb_023386_070 Hb_023386_070 Hb_001205_280--Hb_023386_070 Hb_001384_030 Hb_001384_030 Hb_001205_280--Hb_001384_030 Hb_074674_010 Hb_074674_010 Hb_001205_280--Hb_074674_010 Hb_061361_010 Hb_061361_010 Hb_001205_280--Hb_061361_010 Hb_000025_770 Hb_000025_770 Hb_001205_280--Hb_000025_770 Hb_001817_200--Hb_002391_260 Hb_001817_200--Hb_001571_070 Hb_000413_090 Hb_000413_090 Hb_001817_200--Hb_000413_090 Hb_001817_200--Hb_002259_100 Hb_004645_060 Hb_004645_060 Hb_001817_200--Hb_004645_060 Hb_001322_060 Hb_001322_060 Hb_001817_200--Hb_001322_060 Hb_002259_100--Hb_004645_060 Hb_002259_100--Hb_002391_260 Hb_002259_100--Hb_001571_070 Hb_002259_100--Hb_000413_090 Hb_009323_010 Hb_009323_010 Hb_002259_100--Hb_009323_010 Hb_002391_260--Hb_001571_070 Hb_002391_260--Hb_000413_090 Hb_002391_260--Hb_001322_060 Hb_002391_260--Hb_000003_800 Hb_001571_070--Hb_000413_090 Hb_001571_070--Hb_001322_060 Hb_001571_070--Hb_000003_800
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.30199 0.528647 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0361785 0

CAGE analysis