Hb_003266_110

Information

Type -
Description -
Location Contig3266: 67273-68220
Sequence    

Annotation

kegg
ID rcu:RCOM_0176040
description ATP binding protein, putative (EC:2.5.1.8)
nr
ID XP_002533064.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q93WC9
description Adenylate isopentenyltransferase 3, chloroplastic OS=Arabidopsis thaliana GN=IPT3 PE=1 SV=1
trembl
ID B9T495
description ATP binding protein, putative (Fragment) OS=Ricinus communis GN=RCOM_0176040 PE=3 SV=1
Gene Ontology
ID GO:0009824
description adenylate isopentenyltransferase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003266_110 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_137288_010 0.0009293419 - - hypothetical protein B456_003G055000 [Gossypium raimondii]
3 Hb_000003_800 0.0018813546 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001322_060 0.0018989181 - - unnamed protein product [Vitis vinifera]
5 Hb_001948_060 0.0028227356 - - PREDICTED: glutathione S-transferase DHAR3, chloroplastic [Jatropha curcas]
6 Hb_020479_010 0.0040635448 - - cinnamyl alcohol dehydrogenase [Pyrus pyrifolia]
7 Hb_187418_010 0.0065126396 - - PREDICTED: TMV resistance protein N-like, partial [Citrus sinensis]
8 Hb_000413_090 0.0082793684 - - PREDICTED: transcription factor DYT1 [Jatropha curcas]
9 Hb_001504_200 0.0111704419 - - Beta-3 adrenergic receptor, putative [Theobroma cacao]
10 Hb_001571_070 0.0114601234 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
11 Hb_002391_260 0.0122963929 - - hypothetical protein RCOM_0017280 [Ricinus communis]
12 Hb_004712_120 0.0135007144 - - Pectinesterase U1 precursor, putative [Ricinus communis]
13 Hb_003549_110 0.0136928374 - - PREDICTED: uncharacterized protein LOC105647409 [Jatropha curcas]
14 Hb_001817_200 0.0141757839 - - hypothetical protein CISIN_1g037825mg [Citrus sinensis]
15 Hb_002259_100 0.0211847192 - - PREDICTED: uncharacterized protein LOC105630152 isoform X1 [Jatropha curcas]
16 Hb_001728_090 0.0216312193 transcription factor TF Family: MYB MYB family protein [Jatropha curcas]
17 Hb_002986_150 0.0240183249 - - hypothetical protein glysoja_022060 [Glycine soja]
18 Hb_004645_060 0.0261018938 - - PREDICTED: uncharacterized protein LOC105630948 [Jatropha curcas]
19 Hb_004994_270 0.0333754542 - - PREDICTED: tRNA-specific adenosine deaminase 1 isoform X2 [Jatropha curcas]
20 Hb_014549_030 0.0342063439 - - receptor-kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003266_110 Hb_003266_110 Hb_137288_010 Hb_137288_010 Hb_003266_110--Hb_137288_010 Hb_000003_800 Hb_000003_800 Hb_003266_110--Hb_000003_800 Hb_001322_060 Hb_001322_060 Hb_003266_110--Hb_001322_060 Hb_001948_060 Hb_001948_060 Hb_003266_110--Hb_001948_060 Hb_020479_010 Hb_020479_010 Hb_003266_110--Hb_020479_010 Hb_187418_010 Hb_187418_010 Hb_003266_110--Hb_187418_010 Hb_137288_010--Hb_000003_800 Hb_137288_010--Hb_001322_060 Hb_137288_010--Hb_001948_060 Hb_137288_010--Hb_020479_010 Hb_000413_090 Hb_000413_090 Hb_137288_010--Hb_000413_090 Hb_000003_800--Hb_001322_060 Hb_000003_800--Hb_001948_060 Hb_000003_800--Hb_020479_010 Hb_000003_800--Hb_000413_090 Hb_001322_060--Hb_001948_060 Hb_001322_060--Hb_020479_010 Hb_001322_060--Hb_000413_090 Hb_001948_060--Hb_020479_010 Hb_001948_060--Hb_187418_010 Hb_020479_010--Hb_187418_010 Hb_001504_200 Hb_001504_200 Hb_187418_010--Hb_001504_200 Hb_004712_120 Hb_004712_120 Hb_187418_010--Hb_004712_120 Hb_003549_110 Hb_003549_110 Hb_187418_010--Hb_003549_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.182343 0.0809386 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis