Hb_004712_120

Information

Type -
Description -
Location Contig4712: 69056-71628
Sequence    

Annotation

kegg
ID rcu:RCOM_0521220
description Pectinesterase U1 precursor, putative (EC:3.1.1.11)
nr
ID XP_002522727.1
description Pectinesterase U1 precursor, putative [Ricinus communis]
swissprot
ID Q9FM79
description Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT1 PE=2 SV=1
trembl
ID B9S9Q8
description Pectinesterase OS=Ricinus communis GN=RCOM_0521220 PE=3 SV=1
Gene Ontology
ID GO:0005618
description pectinesterase qrt1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004712_120 0.0 - - Pectinesterase U1 precursor, putative [Ricinus communis]
2 Hb_003549_110 0.0001921391 - - PREDICTED: uncharacterized protein LOC105647409 [Jatropha curcas]
3 Hb_001504_200 0.0023304322 - - Beta-3 adrenergic receptor, putative [Theobroma cacao]
4 Hb_187418_010 0.0069883556 - - PREDICTED: TMV resistance protein N-like, partial [Citrus sinensis]
5 Hb_001728_090 0.0081315723 transcription factor TF Family: MYB MYB family protein [Jatropha curcas]
6 Hb_020479_010 0.0094374068 - - cinnamyl alcohol dehydrogenase [Pyrus pyrifolia]
7 Hb_002986_150 0.0105191398 - - hypothetical protein glysoja_022060 [Glycine soja]
8 Hb_001948_060 0.0106781655 - - PREDICTED: glutathione S-transferase DHAR3, chloroplastic [Jatropha curcas]
9 Hb_003266_110 0.0135007144 - - ATP binding protein, putative [Ricinus communis]
10 Hb_137288_010 0.0144299729 - - hypothetical protein B456_003G055000 [Gossypium raimondii]
11 Hb_000003_800 0.0153818888 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001322_060 0.0153994504 - - unnamed protein product [Vitis vinifera]
13 Hb_004994_270 0.0198787161 - - PREDICTED: tRNA-specific adenosine deaminase 1 isoform X2 [Jatropha curcas]
14 Hb_014549_030 0.0207098715 - - receptor-kinase, putative [Ricinus communis]
15 Hb_000042_410 0.0212296918 - - Patatin precursor, putative [Ricinus communis]
16 Hb_000413_090 0.021778952 - - PREDICTED: transcription factor DYT1 [Jatropha curcas]
17 Hb_171420_010 0.0221369157 - - hypothetical protein AMTR_s00126p00056890 [Amborella trichopoda]
18 Hb_002081_110 0.0246743039 - - PREDICTED: uncharacterized protein LOC105129793 isoform X1 [Populus euphratica]
19 Hb_001031_130 0.0247655012 - - zinc finger protein, putative [Ricinus communis]
20 Hb_001571_070 0.0249590375 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]

Gene co-expression network

sample Hb_004712_120 Hb_004712_120 Hb_003549_110 Hb_003549_110 Hb_004712_120--Hb_003549_110 Hb_001504_200 Hb_001504_200 Hb_004712_120--Hb_001504_200 Hb_187418_010 Hb_187418_010 Hb_004712_120--Hb_187418_010 Hb_001728_090 Hb_001728_090 Hb_004712_120--Hb_001728_090 Hb_020479_010 Hb_020479_010 Hb_004712_120--Hb_020479_010 Hb_002986_150 Hb_002986_150 Hb_004712_120--Hb_002986_150 Hb_003549_110--Hb_001504_200 Hb_003549_110--Hb_187418_010 Hb_003549_110--Hb_001728_090 Hb_003549_110--Hb_020479_010 Hb_003549_110--Hb_002986_150 Hb_001504_200--Hb_187418_010 Hb_001504_200--Hb_020479_010 Hb_001948_060 Hb_001948_060 Hb_001504_200--Hb_001948_060 Hb_001504_200--Hb_001728_090 Hb_187418_010--Hb_020479_010 Hb_187418_010--Hb_001948_060 Hb_003266_110 Hb_003266_110 Hb_187418_010--Hb_003266_110 Hb_001728_090--Hb_002986_150 Hb_004994_270 Hb_004994_270 Hb_001728_090--Hb_004994_270 Hb_014549_030 Hb_014549_030 Hb_001728_090--Hb_014549_030 Hb_020479_010--Hb_001948_060 Hb_020479_010--Hb_003266_110 Hb_137288_010 Hb_137288_010 Hb_020479_010--Hb_137288_010 Hb_000003_800 Hb_000003_800 Hb_020479_010--Hb_000003_800 Hb_001322_060 Hb_001322_060 Hb_020479_010--Hb_001322_060 Hb_002986_150--Hb_004994_270 Hb_002986_150--Hb_014549_030 Hb_000042_410 Hb_000042_410 Hb_002986_150--Hb_000042_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.336564 0.15998 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis