Hb_001504_200

Information

Type -
Description -
Location Contig1504: 199515-200138
Sequence    

Annotation

kegg
ID tcc:TCM_027385
description Beta-3 adrenergic receptor, putative
nr
ID XP_007023376.1
description Beta-3 adrenergic receptor, putative [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061G984
description Beta-3 adrenergic receptor, putative OS=Theobroma cacao GN=TCM_027385 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001504_200 0.0 - - Beta-3 adrenergic receptor, putative [Theobroma cacao]
2 Hb_004712_120 0.0023304322 - - Pectinesterase U1 precursor, putative [Ricinus communis]
3 Hb_003549_110 0.0025225709 - - PREDICTED: uncharacterized protein LOC105647409 [Jatropha curcas]
4 Hb_187418_010 0.0046579576 - - PREDICTED: TMV resistance protein N-like, partial [Citrus sinensis]
5 Hb_020479_010 0.0071070453 - - cinnamyl alcohol dehydrogenase [Pyrus pyrifolia]
6 Hb_001948_060 0.0083478274 - - PREDICTED: glutathione S-transferase DHAR3, chloroplastic [Jatropha curcas]
7 Hb_001728_090 0.0104619165 transcription factor TF Family: MYB MYB family protein [Jatropha curcas]
8 Hb_003266_110 0.0111704419 - - ATP binding protein, putative [Ricinus communis]
9 Hb_137288_010 0.0120997258 - - hypothetical protein B456_003G055000 [Gossypium raimondii]
10 Hb_002986_150 0.0128494325 - - hypothetical protein glysoja_022060 [Glycine soja]
11 Hb_000003_800 0.0130516697 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001322_060 0.0130692319 - - unnamed protein product [Vitis vinifera]
13 Hb_000413_090 0.0194489726 - - PREDICTED: transcription factor DYT1 [Jatropha curcas]
14 Hb_004994_270 0.0222086969 - - PREDICTED: tRNA-specific adenosine deaminase 1 isoform X2 [Jatropha curcas]
15 Hb_001571_070 0.0226292112 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
16 Hb_014549_030 0.0230398162 - - receptor-kinase, putative [Ricinus communis]
17 Hb_002391_260 0.0234653267 - - hypothetical protein RCOM_0017280 [Ricinus communis]
18 Hb_000042_410 0.0235596133 - - Patatin precursor, putative [Ricinus communis]
19 Hb_171420_010 0.0244667953 - - hypothetical protein AMTR_s00126p00056890 [Amborella trichopoda]
20 Hb_001817_200 0.0253443439 - - hypothetical protein CISIN_1g037825mg [Citrus sinensis]

Gene co-expression network

sample Hb_001504_200 Hb_001504_200 Hb_004712_120 Hb_004712_120 Hb_001504_200--Hb_004712_120 Hb_003549_110 Hb_003549_110 Hb_001504_200--Hb_003549_110 Hb_187418_010 Hb_187418_010 Hb_001504_200--Hb_187418_010 Hb_020479_010 Hb_020479_010 Hb_001504_200--Hb_020479_010 Hb_001948_060 Hb_001948_060 Hb_001504_200--Hb_001948_060 Hb_001728_090 Hb_001728_090 Hb_001504_200--Hb_001728_090 Hb_004712_120--Hb_003549_110 Hb_004712_120--Hb_187418_010 Hb_004712_120--Hb_001728_090 Hb_004712_120--Hb_020479_010 Hb_002986_150 Hb_002986_150 Hb_004712_120--Hb_002986_150 Hb_003549_110--Hb_187418_010 Hb_003549_110--Hb_001728_090 Hb_003549_110--Hb_020479_010 Hb_003549_110--Hb_002986_150 Hb_187418_010--Hb_020479_010 Hb_187418_010--Hb_001948_060 Hb_003266_110 Hb_003266_110 Hb_187418_010--Hb_003266_110 Hb_020479_010--Hb_001948_060 Hb_020479_010--Hb_003266_110 Hb_137288_010 Hb_137288_010 Hb_020479_010--Hb_137288_010 Hb_000003_800 Hb_000003_800 Hb_020479_010--Hb_000003_800 Hb_001322_060 Hb_001322_060 Hb_020479_010--Hb_001322_060 Hb_001948_060--Hb_003266_110 Hb_001948_060--Hb_137288_010 Hb_001948_060--Hb_000003_800 Hb_001948_060--Hb_001322_060 Hb_001728_090--Hb_002986_150 Hb_004994_270 Hb_004994_270 Hb_001728_090--Hb_004994_270 Hb_014549_030 Hb_014549_030 Hb_001728_090--Hb_014549_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.166038 0.078001 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis