Hb_000413_090

Information

Type -
Description -
Location Contig413: 81827-82751
Sequence    

Annotation

kegg
ID rcu:RCOM_0906780
description DNA binding protein, putative
nr
ID XP_012092393.1
description PREDICTED: transcription factor DYT1 [Jatropha curcas]
swissprot
ID O81900
description Transcription factor DYT1 OS=Arabidopsis thaliana GN=DYT1 PE=2 SV=1
trembl
ID A0A067JLF3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21306 PE=4 SV=1
Gene Ontology
ID GO:0005488
description transcription factor dysfunctional tapetum 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40924: 81707-82831
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000413_090 0.0 - - PREDICTED: transcription factor DYT1 [Jatropha curcas]
2 Hb_001571_070 0.0031808993 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
3 Hb_002391_260 0.0040172202 - - hypothetical protein RCOM_0017280 [Ricinus communis]
4 Hb_001817_200 0.0058967474 - - hypothetical protein CISIN_1g037825mg [Citrus sinensis]
5 Hb_001322_060 0.0063804978 - - unnamed protein product [Vitis vinifera]
6 Hb_000003_800 0.006398061 - - conserved hypothetical protein [Ricinus communis]
7 Hb_137288_010 0.0073500533 - - hypothetical protein B456_003G055000 [Gossypium raimondii]
8 Hb_003266_110 0.0082793684 - - ATP binding protein, putative [Ricinus communis]
9 Hb_001948_060 0.011101982 - - PREDICTED: glutathione S-transferase DHAR3, chloroplastic [Jatropha curcas]
10 Hb_020479_010 0.0123427183 - - cinnamyl alcohol dehydrogenase [Pyrus pyrifolia]
11 Hb_002259_100 0.0129064457 - - PREDICTED: uncharacterized protein LOC105630152 isoform X1 [Jatropha curcas]
12 Hb_187418_010 0.0147916345 - - PREDICTED: TMV resistance protein N-like, partial [Citrus sinensis]
13 Hb_004645_060 0.0178243996 - - PREDICTED: uncharacterized protein LOC105630948 [Jatropha curcas]
14 Hb_001504_200 0.0194489726 - - Beta-3 adrenergic receptor, putative [Theobroma cacao]
15 Hb_004712_120 0.021778952 - - Pectinesterase U1 precursor, putative [Ricinus communis]
16 Hb_003549_110 0.021971049 - - PREDICTED: uncharacterized protein LOC105647409 [Jatropha curcas]
17 Hb_009323_010 0.029234603 - - hypothetical protein POPTR_0008s03350g, partial [Populus trichocarpa]
18 Hb_001728_090 0.0299081221 transcription factor TF Family: MYB MYB family protein [Jatropha curcas]
19 Hb_002986_150 0.0322947451 - - hypothetical protein glysoja_022060 [Glycine soja]
20 Hb_007552_030 0.0325742155 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_21064 [Jatropha curcas]

Gene co-expression network

sample Hb_000413_090 Hb_000413_090 Hb_001571_070 Hb_001571_070 Hb_000413_090--Hb_001571_070 Hb_002391_260 Hb_002391_260 Hb_000413_090--Hb_002391_260 Hb_001817_200 Hb_001817_200 Hb_000413_090--Hb_001817_200 Hb_001322_060 Hb_001322_060 Hb_000413_090--Hb_001322_060 Hb_000003_800 Hb_000003_800 Hb_000413_090--Hb_000003_800 Hb_137288_010 Hb_137288_010 Hb_000413_090--Hb_137288_010 Hb_001571_070--Hb_002391_260 Hb_001571_070--Hb_001817_200 Hb_001571_070--Hb_001322_060 Hb_001571_070--Hb_000003_800 Hb_002259_100 Hb_002259_100 Hb_001571_070--Hb_002259_100 Hb_002391_260--Hb_001817_200 Hb_002391_260--Hb_002259_100 Hb_002391_260--Hb_001322_060 Hb_002391_260--Hb_000003_800 Hb_001817_200--Hb_002259_100 Hb_004645_060 Hb_004645_060 Hb_001817_200--Hb_004645_060 Hb_001817_200--Hb_001322_060 Hb_001322_060--Hb_000003_800 Hb_001322_060--Hb_137288_010 Hb_003266_110 Hb_003266_110 Hb_001322_060--Hb_003266_110 Hb_001948_060 Hb_001948_060 Hb_001322_060--Hb_001948_060 Hb_020479_010 Hb_020479_010 Hb_001322_060--Hb_020479_010 Hb_000003_800--Hb_137288_010 Hb_000003_800--Hb_003266_110 Hb_000003_800--Hb_001948_060 Hb_000003_800--Hb_020479_010 Hb_137288_010--Hb_003266_110 Hb_137288_010--Hb_001948_060 Hb_137288_010--Hb_020479_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.106227 0.0451934 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis