Hb_002391_260

Information

Type -
Description -
Location Contig2391: 158188-158957
Sequence    

Annotation

kegg
ID rcu:RCOM_0017280
description hypothetical protein
nr
ID XP_002530728.1
description hypothetical protein RCOM_0017280 [Ricinus communis]
swissprot
ID Q8LPG9
description Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQD14 PE=1 SV=1
trembl
ID B9SXK9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0017280 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002391_260 0.0 - - hypothetical protein RCOM_0017280 [Ricinus communis]
2 Hb_001571_070 0.0008363261 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
3 Hb_001817_200 0.0018795489 - - hypothetical protein CISIN_1g037825mg [Citrus sinensis]
4 Hb_000413_090 0.0040172202 - - PREDICTED: transcription factor DYT1 [Jatropha curcas]
5 Hb_002259_100 0.0088894518 - - PREDICTED: uncharacterized protein LOC105630152 isoform X1 [Jatropha curcas]
6 Hb_001322_060 0.0103975901 - - unnamed protein product [Vitis vinifera]
7 Hb_000003_800 0.0104151528 - - conserved hypothetical protein [Ricinus communis]
8 Hb_137288_010 0.0113671127 - - hypothetical protein B456_003G055000 [Gossypium raimondii]
9 Hb_003266_110 0.0122963929 - - ATP binding protein, putative [Ricinus communis]
10 Hb_004645_060 0.0138076677 - - PREDICTED: uncharacterized protein LOC105630948 [Jatropha curcas]
11 Hb_001948_060 0.0151188806 - - PREDICTED: glutathione S-transferase DHAR3, chloroplastic [Jatropha curcas]
12 Hb_020479_010 0.0163595521 - - cinnamyl alcohol dehydrogenase [Pyrus pyrifolia]
13 Hb_187418_010 0.0188083239 - - PREDICTED: TMV resistance protein N-like, partial [Citrus sinensis]
14 Hb_001504_200 0.0234653267 - - Beta-3 adrenergic receptor, putative [Theobroma cacao]
15 Hb_009323_010 0.0252188666 - - hypothetical protein POPTR_0008s03350g, partial [Populus trichocarpa]
16 Hb_004712_120 0.025795109 - - Pectinesterase U1 precursor, putative [Ricinus communis]
17 Hb_003549_110 0.0259871889 - - PREDICTED: uncharacterized protein LOC105647409 [Jatropha curcas]
18 Hb_007552_030 0.0285588753 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_21064 [Jatropha curcas]
19 Hb_004126_020 0.0333732731 - - PREDICTED: uncharacterized protein LOC105649549 [Jatropha curcas]
20 Hb_001728_090 0.03392344 transcription factor TF Family: MYB MYB family protein [Jatropha curcas]

Gene co-expression network

sample Hb_002391_260 Hb_002391_260 Hb_001571_070 Hb_001571_070 Hb_002391_260--Hb_001571_070 Hb_001817_200 Hb_001817_200 Hb_002391_260--Hb_001817_200 Hb_000413_090 Hb_000413_090 Hb_002391_260--Hb_000413_090 Hb_002259_100 Hb_002259_100 Hb_002391_260--Hb_002259_100 Hb_001322_060 Hb_001322_060 Hb_002391_260--Hb_001322_060 Hb_000003_800 Hb_000003_800 Hb_002391_260--Hb_000003_800 Hb_001571_070--Hb_001817_200 Hb_001571_070--Hb_000413_090 Hb_001571_070--Hb_001322_060 Hb_001571_070--Hb_000003_800 Hb_001571_070--Hb_002259_100 Hb_001817_200--Hb_000413_090 Hb_001817_200--Hb_002259_100 Hb_004645_060 Hb_004645_060 Hb_001817_200--Hb_004645_060 Hb_001817_200--Hb_001322_060 Hb_000413_090--Hb_001322_060 Hb_000413_090--Hb_000003_800 Hb_137288_010 Hb_137288_010 Hb_000413_090--Hb_137288_010 Hb_002259_100--Hb_004645_060 Hb_002259_100--Hb_000413_090 Hb_009323_010 Hb_009323_010 Hb_002259_100--Hb_009323_010 Hb_001322_060--Hb_000003_800 Hb_001322_060--Hb_137288_010 Hb_003266_110 Hb_003266_110 Hb_001322_060--Hb_003266_110 Hb_001948_060 Hb_001948_060 Hb_001322_060--Hb_001948_060 Hb_020479_010 Hb_020479_010 Hb_001322_060--Hb_020479_010 Hb_000003_800--Hb_137288_010 Hb_000003_800--Hb_003266_110 Hb_000003_800--Hb_001948_060 Hb_000003_800--Hb_020479_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.877134 0.365518 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis