Hb_009323_010

Information

Type -
Description -
Location Contig9323: 20329-21660
Sequence    

Annotation

kegg
ID pop:POPTR_0008s03350g
description hypothetical protein
nr
ID XP_006379530.1
description hypothetical protein POPTR_0008s03350g, partial [Populus trichocarpa]
swissprot
ID Q70PR7
description Vinorine synthase OS=Rauvolfia serpentina GN=ACT PE=1 SV=2
trembl
ID U5G7B1
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0008s03350g PE=4 SV=1
Gene Ontology
ID GO:0016747
description vinorine synthase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62873: 20481-20980
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009323_010 0.0 - - hypothetical protein POPTR_0008s03350g, partial [Populus trichocarpa]
2 Hb_007552_030 0.0033412659 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_21064 [Jatropha curcas]
3 Hb_004126_020 0.008158016 - - PREDICTED: uncharacterized protein LOC105649549 [Jatropha curcas]
4 Hb_004645_060 0.0114132354 - - PREDICTED: uncharacterized protein LOC105630948 [Jatropha curcas]
5 Hb_001268_270 0.011744454 - - protein binding protein, putative [Ricinus communis]
6 Hb_000691_040 0.0121954053 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
7 Hb_046615_050 0.013146754 - - PREDICTED: probable terpene synthase 13 [Jatropha curcas]
8 Hb_002259_100 0.0163312791 - - PREDICTED: uncharacterized protein LOC105630152 isoform X1 [Jatropha curcas]
9 Hb_012143_010 0.0164965268 - - PREDICTED: serine/threonine-protein kinase At5g01020 [Vitis vinifera]
10 Hb_001132_020 0.0194125165 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
11 Hb_000381_060 0.0222392302 - - -
12 Hb_001019_110 0.0226721669 - - PREDICTED: cytochrome P450 734A1 [Jatropha curcas]
13 Hb_001817_200 0.023339876 - - hypothetical protein CISIN_1g037825mg [Citrus sinensis]
14 Hb_002391_260 0.0252188666 - - hypothetical protein RCOM_0017280 [Ricinus communis]
15 Hb_000221_010 0.0256248418 - - polyprotein [Oryza australiensis]
16 Hb_001571_070 0.0260549162 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
17 Hb_000413_090 0.029234603 - - PREDICTED: transcription factor DYT1 [Jatropha curcas]
18 Hb_002817_020 0.0298266076 - - -
19 Hb_002391_280 0.0301959259 - - PREDICTED: ammonium transporter 3 member 1-like [Jatropha curcas]
20 Hb_000008_100 0.0312772402 - - Cyclic nucleotide-gated channel 15 [Theobroma cacao]

Gene co-expression network

sample Hb_009323_010 Hb_009323_010 Hb_007552_030 Hb_007552_030 Hb_009323_010--Hb_007552_030 Hb_004126_020 Hb_004126_020 Hb_009323_010--Hb_004126_020 Hb_004645_060 Hb_004645_060 Hb_009323_010--Hb_004645_060 Hb_001268_270 Hb_001268_270 Hb_009323_010--Hb_001268_270 Hb_000691_040 Hb_000691_040 Hb_009323_010--Hb_000691_040 Hb_046615_050 Hb_046615_050 Hb_009323_010--Hb_046615_050 Hb_007552_030--Hb_004126_020 Hb_007552_030--Hb_001268_270 Hb_007552_030--Hb_000691_040 Hb_007552_030--Hb_046615_050 Hb_012143_010 Hb_012143_010 Hb_007552_030--Hb_012143_010 Hb_004126_020--Hb_001268_270 Hb_004126_020--Hb_000691_040 Hb_004126_020--Hb_046615_050 Hb_004126_020--Hb_012143_010 Hb_002259_100 Hb_002259_100 Hb_004645_060--Hb_002259_100 Hb_001817_200 Hb_001817_200 Hb_004645_060--Hb_001817_200 Hb_002391_260 Hb_002391_260 Hb_004645_060--Hb_002391_260 Hb_001571_070 Hb_001571_070 Hb_004645_060--Hb_001571_070 Hb_004645_060--Hb_007552_030 Hb_001268_270--Hb_000691_040 Hb_001268_270--Hb_046615_050 Hb_001268_270--Hb_012143_010 Hb_001132_020 Hb_001132_020 Hb_001268_270--Hb_001132_020 Hb_000691_040--Hb_046615_050 Hb_000691_040--Hb_012143_010 Hb_000691_040--Hb_001132_020 Hb_046615_050--Hb_012143_010 Hb_046615_050--Hb_001132_020 Hb_000381_060 Hb_000381_060 Hb_046615_050--Hb_000381_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.12328 0.410124 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis