Hb_012143_010

Information

Type -
Description -
Location Contig12143: 2630-6880
Sequence    

Annotation

kegg
ID vvi:100255419
description serine/threonine-protein kinase At5g01020
nr
ID XP_010656713.1
description PREDICTED: serine/threonine-protein kinase At5g01020 [Vitis vinifera]
swissprot
ID Q8GXZ3
description Serine/threonine-protein kinase At5g01020 OS=Arabidopsis thaliana GN=At5g01020 PE=1 SV=1
trembl
ID F6H9Q4
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0065g00470 PE=3 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase at5g01020-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012143_010 0.0 - - PREDICTED: serine/threonine-protein kinase At5g01020 [Vitis vinifera]
2 Hb_001132_020 0.0029165178 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
3 Hb_046615_050 0.00335018 - - PREDICTED: probable terpene synthase 13 [Jatropha curcas]
4 Hb_000691_040 0.0043016059 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
5 Hb_001268_270 0.0047525878 - - protein binding protein, putative [Ricinus communis]
6 Hb_000381_060 0.0057438996 - - -
7 Hb_001019_110 0.0061769523 - - PREDICTED: cytochrome P450 734A1 [Jatropha curcas]
8 Hb_004126_020 0.0083391354 - - PREDICTED: uncharacterized protein LOC105649549 [Jatropha curcas]
9 Hb_000221_010 0.0091305166 - - polyprotein [Oryza australiensis]
10 Hb_007552_030 0.0131556618 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_21064 [Jatropha curcas]
11 Hb_002817_020 0.0133338458 - - -
12 Hb_002391_280 0.0137033184 - - PREDICTED: ammonium transporter 3 member 1-like [Jatropha curcas]
13 Hb_000008_100 0.0147851004 - - Cyclic nucleotide-gated channel 15 [Theobroma cacao]
14 Hb_009323_010 0.0164965268 - - hypothetical protein POPTR_0008s03350g, partial [Populus trichocarpa]
15 Hb_000334_100 0.0183585607 - - hypothetical protein JCGZ_16788 [Jatropha curcas]
16 Hb_000489_050 0.0218683284 - - PREDICTED: uncharacterized protein LOC105643984 isoform X1 [Jatropha curcas]
17 Hb_003667_030 0.023959304 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL15 [Jatropha curcas]
18 Hb_156853_010 0.0265015916 - - PREDICTED: vinorine synthase-like [Populus euphratica]
19 Hb_004645_060 0.0279069165 - - PREDICTED: uncharacterized protein LOC105630948 [Jatropha curcas]
20 Hb_002151_140 0.0307007 - - PREDICTED: lichenase-2-like [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_012143_010 Hb_012143_010 Hb_001132_020 Hb_001132_020 Hb_012143_010--Hb_001132_020 Hb_046615_050 Hb_046615_050 Hb_012143_010--Hb_046615_050 Hb_000691_040 Hb_000691_040 Hb_012143_010--Hb_000691_040 Hb_001268_270 Hb_001268_270 Hb_012143_010--Hb_001268_270 Hb_000381_060 Hb_000381_060 Hb_012143_010--Hb_000381_060 Hb_001019_110 Hb_001019_110 Hb_012143_010--Hb_001019_110 Hb_001132_020--Hb_000381_060 Hb_001132_020--Hb_001019_110 Hb_000221_010 Hb_000221_010 Hb_001132_020--Hb_000221_010 Hb_001132_020--Hb_046615_050 Hb_001132_020--Hb_000691_040 Hb_046615_050--Hb_000691_040 Hb_046615_050--Hb_001268_270 Hb_004126_020 Hb_004126_020 Hb_046615_050--Hb_004126_020 Hb_046615_050--Hb_000381_060 Hb_000691_040--Hb_001268_270 Hb_000691_040--Hb_004126_020 Hb_007552_030 Hb_007552_030 Hb_000691_040--Hb_007552_030 Hb_001268_270--Hb_004126_020 Hb_001268_270--Hb_001132_020 Hb_001268_270--Hb_007552_030 Hb_000381_060--Hb_001019_110 Hb_000381_060--Hb_000221_010 Hb_002817_020 Hb_002817_020 Hb_000381_060--Hb_002817_020 Hb_002391_280 Hb_002391_280 Hb_000381_060--Hb_002391_280 Hb_001019_110--Hb_000221_010 Hb_001019_110--Hb_002817_020 Hb_001019_110--Hb_002391_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0542716 0.0181334 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis