Hb_002391_280

Information

Type -
Description -
Location Contig2391: 180528-182840
Sequence    

Annotation

kegg
ID rcu:RCOM_0783250
description ammonium transporter, putative
nr
ID XP_012065329.1
description PREDICTED: ammonium transporter 3 member 1-like [Jatropha curcas]
swissprot
ID Q851M9
description Ammonium transporter 3 member 2 OS=Oryza sativa subsp. japonica GN=AMT3-2 PE=2 SV=1
trembl
ID W9SKF2
description Ammonium transporter OS=Morus notabilis GN=L484_026608 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25064: 182695-182857
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002391_280 0.0 - - PREDICTED: ammonium transporter 3 member 1-like [Jatropha curcas]
2 Hb_002817_020 0.0003695131 - - -
3 Hb_000008_100 0.0010819138 - - Cyclic nucleotide-gated channel 15 [Theobroma cacao]
4 Hb_000221_010 0.0045731429 - - polyprotein [Oryza australiensis]
5 Hb_000334_100 0.0046559503 - - hypothetical protein JCGZ_16788 [Jatropha curcas]
6 Hb_001019_110 0.0075267443 - - PREDICTED: cytochrome P450 734A1 [Jatropha curcas]
7 Hb_000381_060 0.0079597905 - - -
8 Hb_000489_050 0.0081664972 - - PREDICTED: uncharacterized protein LOC105643984 isoform X1 [Jatropha curcas]
9 Hb_003667_030 0.0102580387 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL15 [Jatropha curcas]
10 Hb_001132_020 0.0107870554 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
11 Hb_012143_010 0.0137033184 - - PREDICTED: serine/threonine-protein kinase At5g01020 [Vitis vinifera]
12 Hb_002151_140 0.0170017869 - - PREDICTED: lichenase-2-like [Pyrus x bretschneideri]
13 Hb_046615_050 0.0170530403 - - PREDICTED: probable terpene synthase 13 [Jatropha curcas]
14 Hb_000691_040 0.018004304 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
15 Hb_001268_270 0.0184552042 - - protein binding protein, putative [Ricinus communis]
16 Hb_000784_050 0.0187319734 - - PREDICTED: auxin-induced protein X10A-like [Nelumbo nucifera]
17 Hb_000280_070 0.0192565538 - - PREDICTED: PCTP-like protein isoform X1 [Jatropha curcas]
18 Hb_156853_010 0.0206360261 - - PREDICTED: vinorine synthase-like [Populus euphratica]
19 Hb_000307_080 0.0212179172 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004126_020 0.0220409904 - - PREDICTED: uncharacterized protein LOC105649549 [Jatropha curcas]

Gene co-expression network

sample Hb_002391_280 Hb_002391_280 Hb_002817_020 Hb_002817_020 Hb_002391_280--Hb_002817_020 Hb_000008_100 Hb_000008_100 Hb_002391_280--Hb_000008_100 Hb_000221_010 Hb_000221_010 Hb_002391_280--Hb_000221_010 Hb_000334_100 Hb_000334_100 Hb_002391_280--Hb_000334_100 Hb_001019_110 Hb_001019_110 Hb_002391_280--Hb_001019_110 Hb_000381_060 Hb_000381_060 Hb_002391_280--Hb_000381_060 Hb_002817_020--Hb_000008_100 Hb_002817_020--Hb_000221_010 Hb_002817_020--Hb_000334_100 Hb_002817_020--Hb_001019_110 Hb_002817_020--Hb_000381_060 Hb_000008_100--Hb_000334_100 Hb_000008_100--Hb_000221_010 Hb_000489_050 Hb_000489_050 Hb_000008_100--Hb_000489_050 Hb_000008_100--Hb_001019_110 Hb_000221_010--Hb_001019_110 Hb_000221_010--Hb_000381_060 Hb_001132_020 Hb_001132_020 Hb_000221_010--Hb_001132_020 Hb_000334_100--Hb_000489_050 Hb_003667_030 Hb_003667_030 Hb_000334_100--Hb_003667_030 Hb_000334_100--Hb_000221_010 Hb_001019_110--Hb_000381_060 Hb_001019_110--Hb_001132_020 Hb_012143_010 Hb_012143_010 Hb_001019_110--Hb_012143_010 Hb_000381_060--Hb_001132_020 Hb_000381_060--Hb_012143_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.130248 0.0403665 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis