Hb_000008_100

Information

Type -
Description -
Location Contig8: 138112-147372
Sequence    

Annotation

kegg
ID tcc:TCM_042082
description Cyclic nucleotide-gated channel 15
nr
ID XP_007016780.1
description Cyclic nucleotide-gated channel 15 [Theobroma cacao]
swissprot
ID Q9SL29
description Putative cyclic nucleotide-gated ion channel 15 OS=Arabidopsis thaliana GN=CNGC15 PE=3 SV=1
trembl
ID A0A061H096
description Cyclic nucleotide-gated channel 15 OS=Theobroma cacao GN=TCM_042082 PE=4 SV=1
Gene Ontology
ID GO:0016020
description cyclic nucleotide-gated ion channel 15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000008_100 0.0 - - Cyclic nucleotide-gated channel 15 [Theobroma cacao]
2 Hb_002391_280 0.0010819138 - - PREDICTED: ammonium transporter 3 member 1-like [Jatropha curcas]
3 Hb_002817_020 0.0014514265 - - -
4 Hb_000334_100 0.0035740476 - - hypothetical protein JCGZ_16788 [Jatropha curcas]
5 Hb_000221_010 0.0056550396 - - polyprotein [Oryza australiensis]
6 Hb_000489_050 0.0070846223 - - PREDICTED: uncharacterized protein LOC105643984 isoform X1 [Jatropha curcas]
7 Hb_001019_110 0.0086086155 - - PREDICTED: cytochrome P450 734A1 [Jatropha curcas]
8 Hb_000381_060 0.009041657 - - -
9 Hb_003667_030 0.0091761885 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL15 [Jatropha curcas]
10 Hb_001132_020 0.0118688855 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
11 Hb_012143_010 0.0147851004 - - PREDICTED: serine/threonine-protein kinase At5g01020 [Vitis vinifera]
12 Hb_002151_140 0.0159200576 - - PREDICTED: lichenase-2-like [Pyrus x bretschneideri]
13 Hb_000784_050 0.0176502857 - - PREDICTED: auxin-induced protein X10A-like [Nelumbo nucifera]
14 Hb_046615_050 0.0181347539 - - PREDICTED: probable terpene synthase 13 [Jatropha curcas]
15 Hb_000280_070 0.0181748795 - - PREDICTED: PCTP-like protein isoform X1 [Jatropha curcas]
16 Hb_000691_040 0.0190859957 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
17 Hb_001268_270 0.0195368851 - - protein binding protein, putative [Ricinus communis]
18 Hb_000307_080 0.0201362966 - - conserved hypothetical protein [Ricinus communis]
19 Hb_156853_010 0.0204940109 - - PREDICTED: vinorine synthase-like [Populus euphratica]
20 Hb_000173_070 0.0211278636 transcription factor TF Family: bHLH PREDICTED: transcription factor MUTE [Jatropha curcas]

Gene co-expression network

sample Hb_000008_100 Hb_000008_100 Hb_002391_280 Hb_002391_280 Hb_000008_100--Hb_002391_280 Hb_002817_020 Hb_002817_020 Hb_000008_100--Hb_002817_020 Hb_000334_100 Hb_000334_100 Hb_000008_100--Hb_000334_100 Hb_000221_010 Hb_000221_010 Hb_000008_100--Hb_000221_010 Hb_000489_050 Hb_000489_050 Hb_000008_100--Hb_000489_050 Hb_001019_110 Hb_001019_110 Hb_000008_100--Hb_001019_110 Hb_002391_280--Hb_002817_020 Hb_002391_280--Hb_000221_010 Hb_002391_280--Hb_000334_100 Hb_002391_280--Hb_001019_110 Hb_000381_060 Hb_000381_060 Hb_002391_280--Hb_000381_060 Hb_002817_020--Hb_000221_010 Hb_002817_020--Hb_000334_100 Hb_002817_020--Hb_001019_110 Hb_002817_020--Hb_000381_060 Hb_000334_100--Hb_000489_050 Hb_003667_030 Hb_003667_030 Hb_000334_100--Hb_003667_030 Hb_000334_100--Hb_000221_010 Hb_000221_010--Hb_001019_110 Hb_000221_010--Hb_000381_060 Hb_001132_020 Hb_001132_020 Hb_000221_010--Hb_001132_020 Hb_000489_050--Hb_003667_030 Hb_000489_050--Hb_002391_280 Hb_000489_050--Hb_002817_020 Hb_002151_140 Hb_002151_140 Hb_000489_050--Hb_002151_140 Hb_001019_110--Hb_000381_060 Hb_001019_110--Hb_001132_020 Hb_012143_010 Hb_012143_010 Hb_001019_110--Hb_012143_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0101097 0.00311446 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis