Hb_003667_030

Information

Type transcription factor
Description TF Family: MIKC
Location Contig3667: 40274-44741
Sequence    

Annotation

kegg
ID pop:POPTR_0009s06060g
description POPTRDRAFT_877350; hypothetical protein
nr
ID XP_012065634.1
description PREDICTED: agamous-like MADS-box protein AGL15 [Jatropha curcas]
swissprot
ID Q38847
description Agamous-like MADS-box protein AGL15 OS=Arabidopsis thaliana GN=AGL15 PE=1 SV=1
trembl
ID A0A067L5A5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16894 PE=4 SV=1
Gene Ontology
ID GO:0005634
description agamous-like mads-box protein agl15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003667_030 0.0 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL15 [Jatropha curcas]
2 Hb_000489_050 0.002091652 - - PREDICTED: uncharacterized protein LOC105643984 isoform X1 [Jatropha curcas]
3 Hb_000334_100 0.0056022562 - - hypothetical protein JCGZ_16788 [Jatropha curcas]
4 Hb_002151_140 0.0067445001 - - PREDICTED: lichenase-2-like [Pyrus x bretschneideri]
5 Hb_000784_050 0.0084749785 - - PREDICTED: auxin-induced protein X10A-like [Nelumbo nucifera]
6 Hb_000280_070 0.0089996556 - - PREDICTED: PCTP-like protein isoform X1 [Jatropha curcas]
7 Hb_000008_100 0.0091761885 - - Cyclic nucleotide-gated channel 15 [Theobroma cacao]
8 Hb_002391_280 0.0102580387 - - PREDICTED: ammonium transporter 3 member 1-like [Jatropha curcas]
9 Hb_002817_020 0.0106275268 - - -
10 Hb_000307_080 0.0109614137 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000173_070 0.0119531713 transcription factor TF Family: bHLH PREDICTED: transcription factor MUTE [Jatropha curcas]
12 Hb_003995_040 0.0126335995 - - PREDICTED: tropinone reductase homolog At2g29290-like [Jatropha curcas]
13 Hb_000417_240 0.012773716 - - PREDICTED: uncharacterized protein LOC105649697 [Jatropha curcas]
14 Hb_000221_010 0.0148307516 - - polyprotein [Oryza australiensis]
15 Hb_007975_070 0.0177186143 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
16 Hb_001019_110 0.017783938 - - PREDICTED: cytochrome P450 734A1 [Jatropha curcas]
17 Hb_000381_060 0.0182169145 - - -
18 Hb_105767_030 0.0191226098 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001132_020 0.0210436682 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
20 Hb_156853_010 0.0215535557 - - PREDICTED: vinorine synthase-like [Populus euphratica]

Gene co-expression network

sample Hb_003667_030 Hb_003667_030 Hb_000489_050 Hb_000489_050 Hb_003667_030--Hb_000489_050 Hb_000334_100 Hb_000334_100 Hb_003667_030--Hb_000334_100 Hb_002151_140 Hb_002151_140 Hb_003667_030--Hb_002151_140 Hb_000784_050 Hb_000784_050 Hb_003667_030--Hb_000784_050 Hb_000280_070 Hb_000280_070 Hb_003667_030--Hb_000280_070 Hb_000008_100 Hb_000008_100 Hb_003667_030--Hb_000008_100 Hb_000489_050--Hb_000334_100 Hb_000489_050--Hb_000008_100 Hb_002391_280 Hb_002391_280 Hb_000489_050--Hb_002391_280 Hb_002817_020 Hb_002817_020 Hb_000489_050--Hb_002817_020 Hb_000489_050--Hb_002151_140 Hb_000334_100--Hb_000008_100 Hb_000334_100--Hb_002391_280 Hb_000334_100--Hb_002817_020 Hb_000221_010 Hb_000221_010 Hb_000334_100--Hb_000221_010 Hb_002151_140--Hb_000784_050 Hb_002151_140--Hb_000280_070 Hb_000307_080 Hb_000307_080 Hb_002151_140--Hb_000307_080 Hb_000173_070 Hb_000173_070 Hb_002151_140--Hb_000173_070 Hb_003995_040 Hb_003995_040 Hb_002151_140--Hb_003995_040 Hb_000417_240 Hb_000417_240 Hb_002151_140--Hb_000417_240 Hb_000784_050--Hb_000280_070 Hb_000784_050--Hb_000307_080 Hb_000784_050--Hb_000173_070 Hb_000784_050--Hb_003995_040 Hb_000784_050--Hb_000417_240 Hb_000280_070--Hb_000307_080 Hb_000280_070--Hb_000173_070 Hb_000280_070--Hb_003995_040 Hb_000280_070--Hb_000417_240 Hb_000008_100--Hb_002391_280 Hb_000008_100--Hb_002817_020 Hb_000008_100--Hb_000221_010 Hb_001019_110 Hb_001019_110 Hb_000008_100--Hb_001019_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.329067 0.0963075 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis