Hb_000173_070

Information

Type transcription factor
Description TF Family: bHLH
Location Contig173: 45326-46497
Sequence    

Annotation

kegg
ID rcu:RCOM_0912780
description DNA binding protein, putative
nr
ID XP_012069528.1
description PREDICTED: transcription factor MUTE [Jatropha curcas]
swissprot
ID Q9M8K6
description Transcription factor MUTE OS=Arabidopsis thaliana GN=MUTE PE=2 SV=1
trembl
ID B9RTU1
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0912780 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor mute

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16418: 45595-46581 , PASA_asmbl_16420: 45736-46545
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000173_070 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor MUTE [Jatropha curcas]
2 Hb_003995_040 0.000680497 - - PREDICTED: tropinone reductase homolog At2g29290-like [Jatropha curcas]
3 Hb_000417_240 0.0008206285 - - PREDICTED: uncharacterized protein LOC105649697 [Jatropha curcas]
4 Hb_000307_080 0.0009918442 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000280_070 0.0029537269 - - PREDICTED: PCTP-like protein isoform X1 [Jatropha curcas]
6 Hb_000784_050 0.0034784268 - - PREDICTED: auxin-induced protein X10A-like [Nelumbo nucifera]
7 Hb_002151_140 0.0052089493 - - PREDICTED: lichenase-2-like [Pyrus x bretschneideri]
8 Hb_007975_070 0.0057662663 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
9 Hb_105767_030 0.007170546 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003667_030 0.0119531713 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL15 [Jatropha curcas]
11 Hb_000489_050 0.014044594 - - PREDICTED: uncharacterized protein LOC105643984 isoform X1 [Jatropha curcas]
12 Hb_130862_010 0.0164290906 - - purine permease, putative [Ricinus communis]
13 Hb_000334_100 0.0175546642 - - hypothetical protein JCGZ_16788 [Jatropha curcas]
14 Hb_090511_010 0.0186795319 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
15 Hb_012675_030 0.0189865843 - - hypothetical protein POPTR_0013s04780g [Populus trichocarpa]
16 Hb_000008_100 0.0211278636 - - Cyclic nucleotide-gated channel 15 [Theobroma cacao]
17 Hb_002391_280 0.0222094548 - - PREDICTED: ammonium transporter 3 member 1-like [Jatropha curcas]
18 Hb_002817_020 0.0225788505 - - -
19 Hb_000769_040 0.0237708398 - - hypothetical protein VITISV_028082 [Vitis vinifera]
20 Hb_000221_010 0.026780885 - - polyprotein [Oryza australiensis]

Gene co-expression network

sample Hb_000173_070 Hb_000173_070 Hb_003995_040 Hb_003995_040 Hb_000173_070--Hb_003995_040 Hb_000417_240 Hb_000417_240 Hb_000173_070--Hb_000417_240 Hb_000307_080 Hb_000307_080 Hb_000173_070--Hb_000307_080 Hb_000280_070 Hb_000280_070 Hb_000173_070--Hb_000280_070 Hb_000784_050 Hb_000784_050 Hb_000173_070--Hb_000784_050 Hb_002151_140 Hb_002151_140 Hb_000173_070--Hb_002151_140 Hb_003995_040--Hb_000417_240 Hb_003995_040--Hb_000307_080 Hb_003995_040--Hb_000280_070 Hb_003995_040--Hb_000784_050 Hb_007975_070 Hb_007975_070 Hb_003995_040--Hb_007975_070 Hb_000417_240--Hb_000307_080 Hb_000417_240--Hb_000280_070 Hb_000417_240--Hb_000784_050 Hb_000417_240--Hb_007975_070 Hb_000307_080--Hb_000280_070 Hb_000307_080--Hb_000784_050 Hb_000307_080--Hb_002151_140 Hb_000280_070--Hb_000784_050 Hb_000280_070--Hb_002151_140 Hb_000784_050--Hb_002151_140 Hb_002151_140--Hb_003995_040 Hb_002151_140--Hb_000417_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.714441 0.195369 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis