Hb_007975_070

Information

Type -
Description -
Location Contig7975: 108033-111892
Sequence    

Annotation

kegg
ID rcu:RCOM_0700500
description glycerophosphoryl diester phosphodiesterase, putative
nr
ID XP_002523503.1
description glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
swissprot
ID Q9LVN0
description Glycerophosphodiester phosphodiesterase GDPDL7 OS=Arabidopsis thaliana GN=GDPDL7 PE=2 SV=1
trembl
ID B9SBY4
description Glycerophosphoryl diester phosphodiesterase, putative OS=Ricinus communis GN=RCOM_0700500 PE=4 SV=1
Gene Ontology
ID GO:0005886
description glycerophosphoryl diester phosphodiesterase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007975_070 0.0 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
2 Hb_105767_030 0.0014043201 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000417_240 0.0049456539 - - PREDICTED: uncharacterized protein LOC105649697 [Jatropha curcas]
4 Hb_003995_040 0.0050857831 - - PREDICTED: tropinone reductase homolog At2g29290-like [Jatropha curcas]
5 Hb_000173_070 0.0057662663 transcription factor TF Family: bHLH PREDICTED: transcription factor MUTE [Jatropha curcas]
6 Hb_000307_080 0.006758084 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000280_070 0.0087198916 - - PREDICTED: PCTP-like protein isoform X1 [Jatropha curcas]
8 Hb_000784_050 0.0092445663 - - PREDICTED: auxin-induced protein X10A-like [Nelumbo nucifera]
9 Hb_130862_010 0.0106635382 - - purine permease, putative [Ricinus communis]
10 Hb_002151_140 0.0109749909 - - PREDICTED: lichenase-2-like [Pyrus x bretschneideri]
11 Hb_090511_010 0.0129142523 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
12 Hb_012675_030 0.0132213453 - - hypothetical protein POPTR_0013s04780g [Populus trichocarpa]
13 Hb_003667_030 0.0177186143 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL15 [Jatropha curcas]
14 Hb_000769_040 0.0180063395 - - hypothetical protein VITISV_028082 [Vitis vinifera]
15 Hb_000489_050 0.0198097825 - - PREDICTED: uncharacterized protein LOC105643984 isoform X1 [Jatropha curcas]
16 Hb_022862_010 0.0217989134 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 6 [Jatropha curcas]
17 Hb_000334_100 0.0233193537 - - hypothetical protein JCGZ_16788 [Jatropha curcas]
18 Hb_000193_040 0.0238331667 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]
19 Hb_154114_040 0.0264064607 - - hypothetical protein B456_001G056600 [Gossypium raimondii]
20 Hb_000008_100 0.0268919539 - - Cyclic nucleotide-gated channel 15 [Theobroma cacao]

Gene co-expression network

sample Hb_007975_070 Hb_007975_070 Hb_105767_030 Hb_105767_030 Hb_007975_070--Hb_105767_030 Hb_000417_240 Hb_000417_240 Hb_007975_070--Hb_000417_240 Hb_003995_040 Hb_003995_040 Hb_007975_070--Hb_003995_040 Hb_000173_070 Hb_000173_070 Hb_007975_070--Hb_000173_070 Hb_000307_080 Hb_000307_080 Hb_007975_070--Hb_000307_080 Hb_000280_070 Hb_000280_070 Hb_007975_070--Hb_000280_070 Hb_105767_030--Hb_000417_240 Hb_105767_030--Hb_003995_040 Hb_105767_030--Hb_000173_070 Hb_105767_030--Hb_000307_080 Hb_130862_010 Hb_130862_010 Hb_105767_030--Hb_130862_010 Hb_000417_240--Hb_003995_040 Hb_000417_240--Hb_000173_070 Hb_000417_240--Hb_000307_080 Hb_000417_240--Hb_000280_070 Hb_000784_050 Hb_000784_050 Hb_000417_240--Hb_000784_050 Hb_003995_040--Hb_000173_070 Hb_003995_040--Hb_000307_080 Hb_003995_040--Hb_000280_070 Hb_003995_040--Hb_000784_050 Hb_000173_070--Hb_000307_080 Hb_000173_070--Hb_000280_070 Hb_000173_070--Hb_000784_050 Hb_002151_140 Hb_002151_140 Hb_000173_070--Hb_002151_140 Hb_000307_080--Hb_000280_070 Hb_000307_080--Hb_000784_050 Hb_000307_080--Hb_002151_140 Hb_000280_070--Hb_000784_050 Hb_000280_070--Hb_002151_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.166864 0.044139 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis